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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgaacgtcttctcgattttgagggggcaagatcttctttggccagatttttataattttatttgtaccaagttatagcaaatgttattttatttcccagATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTCGATATTTGCCCTTTTGTTTTGGGAAATAAGGCGCTCAGACTTCGGTATT

Basic information

species Zea mays
transcript GRMZM2G315726_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22489934|gb|BU049857.1|BU049857
EST:     AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAA                         ATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTC
genomic: AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAAgtatgttgaa ... tatttcccagATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTC
EST: gi|24934587|gb|CA452805.1|CA452805
EST:     AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAA                         ATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTC
genomic: AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAAgtatgttgaa ... tatttcccagATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttttataattttatttgtaccaagttatagcaaatgttattttatttcccagATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTCGATATTTGCCCTTTTGTTTTGGGAAATAAGGCGCTCAGACTTCGGTATT
                                       ttattttatttccc  CT-rich tract
     ttataattttatttgt  TA-rich tract