Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagtggagatccgcgtccatcttctattgattaggataccggtatggagtggagatccacacggcctttgtgttctataagtccatgtctcgcggatctgcttgctgcatgctccgctgctgctcgtgaaccttagttgatgagcttactatcttcctcttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG

Basic information

species Zea mays
transcript GRMZM2G314679_T05
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31357552|gb|CD441909.1|CD441909
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTCTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211184335|gb|FL140041.1|FL140041
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTCTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211181937|gb|FL140035.1|FL140035
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211184344|gb|FL140050.1|FL140050
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211184341|gb|FL140047.1|FL140047
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|56382683|gb|CV985352.1|CV985352
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211184337|gb|FL140043.1|FL140043
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211184338|gb|FL140044.1|FL140044
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|62550301|gb|DN830721.1|DN830721
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211181941|gb|FL140039.1|FL140039
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211181938|gb|FL140036.1|FL140036
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211184339|gb|FL140045.1|FL140045
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|33103253|gb|CF063213.1|CF063213
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTCTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211181939|gb|FL140037.1|FL140037
EST:     TGTCCTCTTCCTGTCGCCGCNCTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: TGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211181940|gb|FL140038.1|FL140038
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTCTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211184343|gb|FL140049.1|FL140049
EST:     ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: ACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGgtaaggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctgctgctcgtgaaccttagttgatgagcttactatcttcctcttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
                            agcttac  putative branch site (score: 3)
                              cttactatcttcctct  CT-rich tract
                               ttactat  TA-rich tract