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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggagtggagatccacacggcctttgtgttctataagtccatgtctcgcggatctgcttgctgcatgctccgctgctgctcgtgaaccttagttgatgagcttactatcttcctcttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG

Basic information

species Zea mays
transcript GRMZM2G314679_T04
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211282262|gb|FL038864.1|FL038864
EST:     GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211282264|gb|FL038866.1|FL038866
EST:     GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|28187926|gb|CB179536.1|CB179536
EST:     GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211282263|gb|FL038865.1|FL038865
EST:     GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211282260|gb|FL038862.1|FL038862
EST:     GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: gi|211282261|gb|FL038863.1|FL038863
EST:     GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG                         GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctgctgctcgtgaaccttagttgatgagcttactatcttcctcttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
                            agcttac  putative branch site (score: 3)
                              cttactatcttcctct  CT-rich tract
                               ttactat  TA-rich tract