1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtgttctataagtccatgtctcgcggatctgcttgctgcatgctccgctgctgctcgtgaaccttagttgatgagcttactatcttcctcttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
species | Zea mays |
transcript | GRMZM2G314679_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTGCACGCTGCCNCCGCGATCGCCTCCGCCCCCGATCCAGATCCAG GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGEST: gi|211411154|gb|FK961653.1|FK961653
genomic: CTTGCACGCTGCCCCCGCGCTCGCCTCCGCCCCCGATCCAGATCCAGgtactcttcc ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: AAACTTGCACGCTGCCCCCGCGCTCGCCTCCGCCCCCGATCCAGATCCAG GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: AAACTTGCACGCTGCCCCCGCGCTCGCCTCCGCCCCCGATCCAGATCCAGgtactcttcc ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
cgctgctgctcgtgaaccttagttgatgagcttactatcttcctcttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
agcttac putative branch site (score: 3)
cttactatcttcctct CT-rich tract
ttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttctataagtccatgtctcgcggatctgcttgctgcatgctccgctgctgctcgtgaaccttagttgatgagcttactatcttcctcttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
- - - - - -gtccatg
- - - - - - - - - - - - - - - - ttgctgc
- - - - - - - - - - - - - - - - - - - -atgctcc
- - - - - - - - - - - - - - - - - - - - - - - gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgatg