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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aataagatactactctgatattgcaaaatttactgtatattatttatatatggttgtgattattatttcctgaccattttcattctaccatgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGG

Basic information

species Zea mays
transcript GRMZM2G314386_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211311912|gb|FL092760.1|FL092760
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|32837769|gb|CD977447.1|CD977447
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|148970703|gb|EE021421.2|EE021421
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|211311913|gb|FL092761.1|FL092761
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|32838159|gb|CD977837.1|CD977837
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAG-TGTTCTTCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|211311911|gb|FL092759.1|FL092759
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCAKCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|211311910|gb|FL092758.1|FL092758
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCNAGCGGACCATCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatggttgtgattattatttcctgaccattttcattctaccatgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGCTTTGTCAGGG
                      tcctgac  putative branch site (score: 2)
        ttgtgattattattt  TA-rich tract