1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgcttctgttctcccttttagaactagatgtaaaactcaagtatagctgaatttatctgattaatctactgcatctgtgtgcgaatgtgaaacttgcagATTTCTCCCTGCCCCTGATGATAGTTTAGCACTTGACATAGCGTATACCATCTATATGAAGTTTGGAGACCTTGCAAGTGCTTTGAGAATTTCTCTGCAA
species | Zea mays |
transcript | GRMZM2G314233_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTTACTAGTTCATCCAA ATTTCTCCCTGCCCCTGATGATAGTTTAGCACTTGACATAGCGTATACCATEST: gi|32844567|gb|CD984248.1|CD984248
genomic: ACCTTACTAGTTCATCCAAgtaagtatac ... aaacttgcagATTTCTCCCTGCCCCTGATGATAGTTTAGCACTTGACATAGCGTATACCAT
EST: TACCTTACTAGGTCATCCAA ATTTCTCCCTGCCCCTGATGATAGTTTAGCACTTGACATAGCGTATACCATEST: gi|87151923|gb|DY396712.1|DY396712
genomic: TACCTTACTAGTTCATCCAAgtaagtatac ... aaacttgcagATTTCTCCCTGCCCCTGATGATAGTTTAGCACTTGACATAGCGTATACCAT
EST: GTTTGTACCTTACTAGTTCATCCAA ATTTCTCCCTGCCCCTGATGATAGTTTAGCACTTGACATAGCGTATACCAT
genomic: GTTTGTACCTTACTAGTTCATCCAAgtaagtatac ... aaacttgcagATTTCTCCCTGCCCCTGATGATAGTTTAGCACTTGACATAGCGTATACCAT
agctgaatttatctgattaatctactgcatctgtgtgcgaatgtgaaacttgcagATTTCTCCCTGCCCCTGATGATAGTTTAGCACTTGACATAGCGTATACCATCTATATGAAGTTTGGAGACCTTGCAAGTGCTTTGAGAATTTCTCTGCAA
gattaat putative branch site (score: 418)
aatttatctgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcttctgttctcccttttagaactagatgtaaaactcaagtatagctgaatttatctgattaatctactgcatctgtgtgcgaatgtgaaacttgcagATTTCTCCCTGCCCCTGATGATAGTTTAGCACTTGACATAGCGTATACCATCTATATGAAGTTTGGAGACCTTGCAAGTGCTTTGAGAATTTCTCTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- gcttctg
- - - - - - - - - - - - - - - - - aactcaa
- - - - - - - - - - - - - - - - - - - - - - -agctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgtg