Sequence
atgc intronic sequence ATGC exonic sequence...cattagaattgtgaccacacatagagtaggaaggtttcattatgttactagatttggtgcacattgtacataatgctgatcaatatctcctttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGCTTTCTTGCCAGAAGTACAGAGTGCTGATAGGAAAATACCATTCAGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G307252_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 1
------------------cattagaattgt-gaccaca-catagagtaggaaggtttcattatgttactagatttggtgcacattgtaca--taatgctgatcaa---tatctcctttaatatagA-GAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGCTTTCTTGCCAGAAGTACAGAGTGCTGATAGGAAAATACCATTCAGAGAG
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agatatttgggtgtttgctctttgaatggaagattgcatcatctattatattgctattgattacttatttatttctgtttttggtgaatggctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTGCTTCATCTTGTCAGGCCATTTCTTTCTTTCCTGCCAGAAGTTCAGAGTG--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211122364|gb|FL034215.1|FL034215EST: GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAG AGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
genomic: GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAGgtacgcccag ... tttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactagatttggtgcacattgtacataatgctgatcaatatctcctttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGCTTTCTTGCCAGAAGTACAGAGTGCTGATAGGAAAATACCATTCAGAGAG
tatctccttt CT-rich tract
tttaatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cattagaattgtgaccacacatagagtaggaaggtttcattatgttactagatttggtgcacattgtacataatgctgatcaatatctcctttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGCTTTCTTGCCAGAAGTACAGAGTGCTGATAGGAAAATACCATTCAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - ccacaca
- - - - - - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat