1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttcgccacaggtattttgtaaccagtcattccttggatgttgaatttctgaatatctctggctaacttcagtatgtccttgaaaaattgtggtgttacagGACTCGGTGGAAATGGAGTTCTTCACCGAGTACGGAGAGGCAAGCCAGTACCAGATCCAAGAAGTCATTGGTAAAGGCAGCTACGGGGTAGTTGCTGCAG
species | Zea mays |
transcript | GRMZM2G306028_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGCGTGCCCAAGCGCAAGATGCCGCTCCCCGTCGAGAGCCACAGGAAG GACTCGGGGGAAATGGAGTTCTTCACCGAGTACGGAGAGGCAAGCCAGTACEST: gi|149015191|gb|EE044969.2|EE044969
genomic: TCCGCGTGCCCAAGCGCAAGATGCCGCTCCCCGTCGAGAGCCACAGGAAGgtgagcgact ... ggtgttacagGACTCGGTGGAAATGGAGTTCTTCACCGAGTACGGAGAGGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCGCTCCCCGTCGAGAGCCACAGGAAG GACTCGGTGGAAATGGAGTTCTTCACCGAGTACGGAGAGGCAAGCCAGTAC
genomic: TCCGCGTGCCCAAGCGCAAGATGCCGCTCCCCGTCGAGAGCCACAGGAAGgtgagcgact ... ggtgttacagGACTCGGTGGAAATGGAGTTCTTCACCGAGTACGGAGAGGCAAGCCAGTAC
ttctgaatatctctggctaacttcagtatgtccttgaaaaattgtggtgttacagGACTCGGTGGAAATGGAGTTCTTCACCGAGTACGGAGAGGCAAGCCAGTACCAGATCCAAGAAGTCATTGGTAAAGGCAGCTACGGGGTAGTTGCTGCAG
ggctaac putative branch site (score: 2)
ttgaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgccacaggtattttgtaaccagtcattccttggatgttgaatttctgaatatctctggctaacttcagtatgtccttgaaaaattgtggtgttacagGACTCGGTGGAAATGGAGTTCTTCACCGAGTACGGAGAGGCAAGCCAGTACCAGATCCAAGAAGTCATTGGTAAAGGCAGCTACGGGGTAGTTGCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - cattcct
- - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - tttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaattg