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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgcgctcacgctccgtttgcttgtgatccgtcccgtgcacgctttctgtttgatcaaattccctggcgtgtttcaccatctgtgcttgacacgatgagttggttggtgttgtctttgcagCTTCGGGCGGCTCAGCTCAGGAGGATACTCTTGGAGCTTGGCCCGGTATGTCTCATTTCCTATTGCCTTATCTGATGATCATAAAGTTTATTGATGTTCC

Basic information

species Zea mays
transcript GRMZM2G305007_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211098338|gb|FL317179.1|FL317179
EST:     CGCTGCGGTACCTCGATCGCGTCAACGAGCGCGCCGACGACATGTTCGAG                         CTTCGGGCGGCTCAGCTCAGGAGGATACTCTTGGAGCTTGG
genomic: CGCTGCGGTACCTCGATCGCGTCAACGAGCGCGCCGACGACATGTTCGAGgtccgcgctc ... gtctttgcagCTTCGGGCGGCTCAGCTCAGGAGGATACTCTTGGAGCTTGG
EST: gi|31359132|gb|CD443489.1|CD443489
EST:     CGCTGCGGTACCTCGATCGCGTCAACGAGCGCGCCGACGACATGTTCGAG                         CTTCGGGCGGCTCAGCTCAGGAGGATACTCTTGGAGCTTGGCCCGG
genomic: CGCTGCGGTACCTCGATCGCGTCAACGAGCGCGCCGACGACATGTTCGAGgtccgcgctc ... gtctttgcagCTTCGGGCGGCTCAGCTCAGGAGGATACTCTTGGAGCTTGGCCCGG
EST: gi|9954066|gb|BE640649.1|BE640649
EST:     CGCTGCGGTACCTCGATCGCGTCAACGAGCGCGCCGACGACATGTTCGAG                         CTTCGGGCGGCTCAGCTCAGGAGGATACTCTTGGAGCTTGGCCCGGTATGT
genomic: CGCTGCGGTACCTCGATCGCGTCAACGAGCGCGCCGACGACATGTTCGAGgtccgcgctc ... gtctttgcagCTTCGGGCGGCTCAGCTCAGGAGGATACTCTTGGAGCTTGGCCCGGTATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtgtttcaccatctgtgcttgacacgatgagttggttggtgttgtctttgcagCTTCGGGCGGCTCAGCTCAGGAGGATACTCTTGGAGCTTGGCCCGGTATGTCTCATTTCCTATTGCCTTATCTGATGATCATAAAGTTTATTGATGTTCC
                  gcttgac  putative branch site (score: 4)
                                           ttgtcttt  putative PPT