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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatgttttgttcagttgcattaacattcttgtcctttctcatcatattttgcgatctgagatgctgaccatttagtgcagtttttatgcattattttagtacatatgttcaagaacctcaaattatgtagattatacagGTGTGGACCCCAAACAAACTCCAGGCTTGTTCTGAACTATGGTTTTGTTGATGAAAACAATCCCTTTGATCGCATATCAATTGAG

Basic information

species Zea mays
transcript GRMZM2G302195_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G302195_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv14s0171g00310.t01 (Vitis vinifera), 3'ss of exon 6
gtactatgttttgttcagttgcattaacattcttgtcctttctcatcatattttgcgatctgagatgctgaccatttagtgcagtttttatgcattattttagtacatatgttcaagaacctcaaattatgtagattatacagGTGTGGACCCCAAACAAACTCCAGGCTTGTTCTGAACTATGGTTTTGTTGATGAAAACAATCCCTTTGATCGCATATCAATTGAG
                                                            |    |  |  | || ||  |   ||||||     |      ||  |  || ||    ||          |||   || | |||||||| || ||  | ||||| |   |  ||||||| |||||||||||||||||| ||||| ||| |||||| |||    |||||
-----------------------------------------------------------gtatagtattttctatatatggggttttttaactgatcacaatgtcaagctgctcctttactatcgtcctggtattctacatagGTGTGGTCCACAGCCTAACTCAAAATTGCTTCTGAATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcattattttagtacatatgttcaagaacctcaaattatgtagattatacagGTGTGGACCCCAAACAAACTCCAGGCTTGTTCTGAACTATGGTTTTGTTGATGAAAACAATCCCTTTGATCGCATATCAATTGAG
     attattttagtacata  TA-rich tract