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...atatgaaatatttgagcaaaaggatgccgtgagttattttaatcattgtttctgactttctgtataccctaaagttcatggtatctgtgattgtttttagGCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAAGAGTGGAATATGGTCAAAAGCCTACATATCAA
species | Zea mays |
transcript | GRMZM2G300862_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTT GCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAAEST: gi|148963037|gb|EE013988.2|EE013988
genomic: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTTgtactgatcg ... ttgtttttagGCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
EST: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTT GCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAAEST: gi|149104118|gb|EE289550.2|EE289550
genomic: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTTgtactgatcg ... ttgtttttagGCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
EST: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTT GCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAAEST: gi|50338980|gb|CO534106.1|CO534106
genomic: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTTgtactgatcg ... ttgtttttagGCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
EST: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTT GCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
genomic: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTTgtactgatcg ... ttgtttttagGCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
ttgtttctgactttctgtataccctaaagttcatggtatctgtgattgtttttagGCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAAGAGTGGAATATGGTCAAAAGCCTACATATCAA
ttgttttt CT-rich tract
attgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgaaatatttgagcaaaaggatgccgtgagttattttaatcattgtttctgactttctgtataccctaaagttcatggtatctgtgattgtttttagGCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAAGAGTGGAATATGGTCAAAAGCCTACATATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA