1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggtttttagattttcatgtttgatcactatagttgcggcgacatcgtttttatacacactactgaaaaatgaaatgtccttctctgtacttactttctagGAAATTGCTGCTTACCTGGGTATAGAACTCGGCAAGATCCTGATCAAGCGCTTTGCTGATGGAGAAATTTATGTGCAACTGCAAGAGAGCGTGAGAGGAT
species | Zea mays |
transcript | GRMZM2G180863_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTCCAGGATGAAGATCTTCTCCGGCACGGCTAACCGTCCGCTCGCTCAG GGAATTGCTGCTTACCTGGGTATAGAACTCGGCAAGATCCTGATEST: gi|74240297|gb|DT648211.1|DT648211
genomic: ACTCCAGGATGAAGATCTTCTCCGGCACGGCTAACCGTCCGCTCGCTCAGgtgtttaccg ... tactttctagGAAATTGCTGCTTACCTGGGTATAGAACTCGGCAAGATCCTGAT
EST: ACTCCAGGATGAAGATCTTCTCCGGCACGGCTAACCGTCCGCTCGCTCAG GAAATTGCTGCTTACCTGGGTATAGAACTCGGCAAGATCCTGATCAAGCGCEST: gi|31354391|gb|CD438748.1|CD438748
genomic: ACTCCAGGATGAAGATCTTCTCCGGCACGGCTAACCGTCCGCTCGCTCAGgtgtttaccg ... tactttctagGAAATTGCTGCTTACCTGGGTATAGAACTCGGCAAGATCCTGATCAAGCGC
EST: ACTCCAGGATGAAGATCTTCTCCGGCACGGCTAACCGTCCGCTCGCTCAG GAAATTGCTGCTTACCTGGGTATAGAACTCGGCAAGATCCTGATCAAGCGCEST: gi|149088668|gb|EE177786.2|EE177786
genomic: ACTCCAGGATGAAGATCTTCTCCGGCACGGCTAACCGTCCGCTCGCTCAGgtgtttaccg ... tactttctagGAAATTGCTGCTTACCTGGGTATAGAACTCGGCAAGATCCTGATCAAGCGC
EST: ACTCCAGGATGAAGATCTTCTCCGGCACGGCTAACCGTCCGCTCGCTCAG GAAATTGCTGCTTACCTGGGTATAGAACTCGGCAAGATCCTGATCAAGCGC
genomic: ACTCCAGGATGAAGATCTTCTCCGGCACGGCTAACCGTCCGCTCGCTCAGgtgtttaccg ... tactttctagGAAATTGCTGCTTACCTGGGTATAGAACTCGGCAAGATCCTGATCAAGCGC
gtttttatacacactactgaaaaatgaaatgtccttctctgtacttactttctagGAAATTGCTGCTTACCTGGGTATAGAACTCGGCAAGATCCTGATCAAGCGCTTTGCTGATGGAGAAATTTATGTGCAACTGCAAGAGAGCGTGAGAGGAT
tacttac putative branch site (score: 1)
tccttctctgtactta CT-rich tract
aaaaatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttttagattttcatgtttgatcactatagttgcggcgacatcgtttttatacacactactgaaaaatgaaatgtccttctctgtacttactttctagGAAATTGCTGCTTACCTGGGTATAGAACTCGGCAAGATCCTGATCAAGCGCTTTGCTGATGGAGAAATTTATGTGCAACTGCAAGAGAGCGTGAGAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - catgttt
- - - - - - - - - - - - - - - - -tgcggcg
- - - - - - - - - - - - - - - - - - - - - - - - - -atacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaatg