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...ggaaccgcgagctttcattgcgcctggtgtgatatgcatgtgaatttcagtggtttccttcgcgtttccttaatcatatctcggtttgtttggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGGATTGGCAAGACTCTCGGAATTGGCTCATTCGGGAAGGTGAAAATTGCG
species | Zea mays |
transcript | GRMZM2G180704_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCGCGATCCTCCCGACTAGCCGCGGCTGCCTCCCCTCCAGCGGCCAG GCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGEST: gi|71768950|gb|DR966887.1|DR966887
genomic: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAGgtaggggctc ... tggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
EST: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAG GCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGEST: gi|211439527|gb|FL064919.1|FL064919
genomic: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAGgtaggggctc ... tggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
EST: CCGCCGCGATCCTCCCGACTAGCCGCGGCTGCCTCCCCTCCAGCGGCCAG GCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGEST: gi|211439524|gb|FL064916.1|FL064916
genomic: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAGgtaggggctc ... tggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
EST: CCGCCGCGATCCTCCCGACTAGCCGCGGCTGCCTCCCCTCCAGCGGCCAG GCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGEST: gi|148969836|gb|EE020728.2|EE020728
genomic: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAGgtaggggctc ... tggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
EST: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAG GCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGEST: gi|149088708|gb|EE177828.2|EE177828
genomic: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAGgtaggggctc ... tggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
EST: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAG GCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGEST: gi|149088317|gb|EE177414.2|EE177414
genomic: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAGgtaggggctc ... tggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
EST: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAG GCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGEST: gi|94473981|gb|EB702939.1|EB702939
genomic: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAGgtaggggctc ... tggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
EST: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCTTCCAGCGGCCAG GCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGEST: gi|211006231|gb|FL064937.1|FL064937
genomic: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAGgtaggggctc ... tggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
EST: CCGCCGCGATCCTCCCGACTAGCCGCGGCTGCCTCCCCTCCAGCGGCCAG GCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGEST: gi|148974739|gb|EE025550.2|EE025550
genomic: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAGgtaggggctc ... tggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
EST: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAG GCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGEST: gi|93281926|gb|EB674190.1|EB674190
genomic: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAGgtaggggctc ... tggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
EST: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAG GCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
genomic: CCGCCGCGATCCTCCCGACTAGCCGCGACTGCCTCCCCTCCAGCGGCCAGgtaggggctc ... tggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCG
ttcagtggtttccttcgcgtttccttaatcatatctcggtttgtttggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGGATTGGCAAGACTCTCGGAATTGGCTCATTCGGGAAGGTGAAAATTGCG
ccttaat putative branch site (score: 84)
tttgttt putative PPT
ttaatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaccgcgagctttcattgcgcctggtgtgatatgcatgtgaatttcagtggtttccttcgcgtttccttaatcatatctcggtttgtttggaacttagGCAGAGGATGGAGGGGGCAGGCAAGGATGGCAACCCGTTGAGGAATTATCGGATTGGCAAGACTCTCGGAATTGGCTCATTCGGGAAGGTGAAAATTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - tttcatt
- - - - - - - - - - - cctggtg
- - - - - - - - - - - - - - - - - tgcatgt