Sequence
atgc intronic sequence ATGC exonic sequencegtaaggaccatatgcctaattccatatatatgtttacctctaaaatagatgctcagttgacctttttttttcatgcagTGCACACCAAACTGCTATGCAAGGATTATGAGTGTTGGACATGATGAAAGTCGTATTGTTCTAATAGCGAAGAAAAAAGTTTGCGCTGGTGATGAGCTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G179814_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g46700.1 (Oryza sativa), 3'ss of exon 21
gtaaggaccatatgcctaattccatatatatgtttacctctaaaatag---atgctcagttgaccttttt---ttttcatgcagTGCACACCAAACTGCTATGCAAGGATTATGAGTGTTGGACATGATGAAAGTCGTATTGTTCTAATAGCGAAGAAAAAAGTTTGCGCTGGTGATGAGCTAA
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gtaaggattatatatacccccctaatcccactctagtttctgaaatagtaaacgcgcatatgatgttttcgtgttttattgcagTGCACTCCAAACTGCTATGCAAGGATTATGAGTGTGGGGCATGACGAGAGCCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAA
upper sequence: GRMZM2G179814_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 3'ss of exon 21
gtaaggaccatatgcctaattccatatatatgtttacctctaaaa-----tagatgctcagttgacctttttttttcatgcagTGCACACCAAACTGCTATGCAAGGATTATGAGTGTTGGACATGATGAAAGTCGTATTGTTCTAATAGCGAAGAAAAAAGTTTGCGCTGGTGATGAGCTAA
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gtaagctgcttggcatggactttttacgtacaagaaatttgacagactgttaaagcctaaatcaaaatacgtggt--gtgtagTGTACACCAAACTGCTATGCGAGGATTATGAGTGTAGGAGATGAGGAAAGCAGGATTGTCCTGATAGCCAAGGCCAATGTAGCTGTGGGAGAGGAGTTAA
upper sequence: GRMZM2G179814_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 21
------------------gtaaggaccatatgcctaattccatatatatgtttacctctaaaatagatgctcagttgacctttttttttcatgcagTGCACACCAAACTGCTATGCAAGGATTATGAGTGTTGGACATGATGAAAGTCGTATTGTTCTAATAGCGAAGAAAAAAGTTTGCGCTGGTGATGAGCTAA
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gtaagcaacccatcaagtatataaataagttgagtgattaccaacagat-tagagtcttgagtcctatacctaaatggtgtgttgtgtg-atgcagTGTATGCCAAATTGCTATGCAAGGATTATGAGTGTAGGAGATGACGAAAGTCGGATTGTTCTGATTGCCAAGACCACTGTAGCTTCCTGCGAGGAGTTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatatatgtttacctctaaaatagatgctcagttgacctttttttttcatgcagTGCACACCAAACTGCTATGCAAGGATTATGAGTGTTGGACATGATGAAAGTCGTATTGTTCTAATAGCGAAGAAAAAAGTTTGCGCTGGTGATGAGCTAA
ttgacctttttttttc CT-rich tract
tttttttttcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaggaccatatgcctaattccatatatatgtttacctctaaaatagatgctcagttgacctttttttttcatgcagTGCACACCAAACTGCTATGCAAGGATTATGAGTGTTGGACATGATGAAAGTCGTATTGTTCTAATAGCGAAGAAAAAAGTTTGCGCTGGTGATGAGCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA