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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtaacgctgaccgttcttttttttttctgcttcgcgcgctcttgtgtatgtgtgtgtgtgcatgcatcatgcgtgcgccgttggggggcttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCAAGGACGCCGTCGACCTGTTCGTCGAGCGGTACCGCGGGATGGGCATCGA

Basic information

species Zea mays
transcript GRMZM2G179810_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179810_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g40010.4 (Oryza sativa), 3'ss of exon 1
agtaacgctgaccgttcttttttttttctgcttcgcgcgctcttgtgtatgtgtgtgtgtgcatgcatcatgcgtgcgccgttggggggcttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCAAGGACGCCGTCGACCTGTTCGTCGAGCGGTACCGCGGGATGGGCATCGA
         | |||| || |    | || | |   |    |    | | ||    |   |    | ||| ||  |        | | ||| |||   |||||||||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||||| | ||||||||||| |||||||| |||| ||||| 
---------gtccgt-ctctcccctctcggttcgccagtttgccatatgtgcaaatacctagtggtatc-tgaatatctgcgcgcgcggcgtgcatgcagGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAAGGACGCCGTCGACATCTTCGTCGAGCGCTACCGCGGCATGGCCATCGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211345328|gb|FL243527.1|FL243527
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211345338|gb|FL243537.1|FL243537
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211345333|gb|FL243532.1|FL243532
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211186890|gb|FL377634.1|FL377634
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCSCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCA
EST: gi|211405592|gb|FL390179.1|FL390179
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCSTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211345329|gb|FL243528.1|FL243528
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211347732|gb|FL243543.1|FL243543
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211347733|gb|FL243544.1|FL243544
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211345332|gb|FL243531.1|FL243531
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211345340|gb|FL243539.1|FL243539
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211345334|gb|FL243533.1|FL243533
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211347731|gb|FL243542.1|FL243542
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211309010|gb|FL381282.1|FL381282
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211347730|gb|FL243541.1|FL243541
EST:     GCAGGGCATTTCCGACGCCATCCGCGTSTTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|30088017|gb|CB886222.1|CB886222
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211443612|gb|FL393900.1|FL393900
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211345336|gb|FL243535.1|FL243535
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
EST: gi|211345330|gb|FL243529.1|FL243529
EST:     GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAG                         GCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA
genomic: GCAGGGCATTTCCGACGCCATCCGCGTCGTGCCGCACTTCCCCAAGCAAGgtgcgtgcat ... ttgcggtcagGCATCATGTTCAACGACATCACCACGCTGCTGCTGCGCCCCAGGGTGTTCA