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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatgacatactctgaaatgaaggatttgaaccttgaataatgttcttacagtttgttttttatgcagAACTTCAGAGTCTTTTGTACCCATATGTTTGCCAAGATACAATCCTATGGCCTACTTGCATGCTTATGTTCATTTTTTTGAC

Basic information

species Zea mays
transcript GRMZM2G179732_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179732_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g74460.2 (Oryza sativa), 3'ss of exon 8
---gtaatcatgacata--ctctgaaatgaaggatttgaaccttgaataatgttcttac-agtttgttttttatgcagAACTTCAGAGTCTTTTGTACCCATATGTTTGCCAAGATACAATCCTATGGCCTACTTGCATGCTTATGTTCATTTTTTTGAC
    | |||| |||| |  ||||||||||    || |  || ||||   | |||||||| |  || | ||| |||||| ||||| |||||||||  |||||||||  | |||||||||||| ||||||| | |||  |||||||||||||||||||||| 
gtaatcatcacgacacacactctgaaatggta-atctttactttgag--acgttcttactacattttctttaatgcagGACTTCGGAGTCTTTTTCACCCATATGCCTTCCAAGATACAATTCTATGGCTTTCTTATATGCTTATGTTCATTTTTTTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaatgaaggatttgaaccttgaataatgttcttacagtttgttttttatgcagAACTTCAGAGTCTTTTGTACCCATATGTTTGCCAAGATACAATCCTATGGCCTACTTGCATGCTTATGTTCATTTTTTTGAC
                              ttcttac  putative branch site (score: 2)
                                       tttgtttttt  putative PPT
                                     agtttgttttttat  TA-rich tract