Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caagtaccccaacagcggctgcctgtacagtgcacataaaccattggccaggcaacataagtcatcttgtttttacagcgatgcgtttgcatgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCGGTGCTGGACGGCACCTCCACGTGGCACTTCATGTCCTCCTGGGCCGAGC

Basic information

species Zea mays
transcript GRMZM2G179703_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179703_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g44840.1 (Oryza sativa), 3'ss of exon 1
caagtacc-ccaacagcggctgcctgtacagtgcacataaaccattggccaggcaacataagtcatcttgttt--ttacagcgatgcgtttgc----atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCGGTGCTGGACGGCACCTCCACGTGGCACTTCATGTCCTCCTGGGCCGAGC
     ||| ||||||  | |    | ||      | |   |  | | |  |   |  | ||   |  ||  ||   |||   ||||   |||      ||||||||||| |||   ||   ||||||  |||| ||||||||||||||||||||||| || || |||||||||||||| |||||||||||| | || ||||| ||||
-----accaccaacactgtccaaatttattac-tatacggagtactagt-atatattacaaacaaatttaattaggtactctgatggaattgacgcggtgcatgcagTTGACACGTCTGCGGGACGGGGTGGCAGTGGGGTGCGCCTTCAACCACGCCGTCCTCGACGGCACCTCCACCTGGCACTTCATGACGTCATGGGCGGAGC

upper sequence: GRMZM2G179703_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv16s0050g00830.t01 (Vitis vinifera), 3'ss of exon 1
--caagtaccc-caacagcggctgcctgtacagtgcacata-----aaccattggccaggcaacataagtcatcttgtttttacagcgatgcgtttgcatgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCGGTGCTGGACGGCACCTCCACGTGGCACTTCATGTCCTCCTGGGCCGAGC
  ||| ||| | |     | |   | || ||  | ||| |      ||   |  | | |  | | | || || ||  || ||     |    | |         ||||||||| ||||| |  || || || ||  |||| ||||| |||||||||||| | || ||||| ||||||||||||||||||||| |||| ||||||||| 
gacaattactcactgttaccgtcccttgaacc-tccacgtggctccaattttgagtctgttaccgtgagccaactaattatttttctgtcatgatc-------cgcagTTCACCAAGCTAAGAGATGGACTCGCACTGGGATGCGCTTTCAACCACGCGATCCTCGACGGTACCTCCACGTGGCACTTCATGACCTCGTGGGCCGAGA

upper sequence: GRMZM2G179703_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv16s0050g00870.t01 (Vitis vinifera), 3'ss of exon 1
--------------------------------------------------caagtaccccaacagcggctgcctgtacagt---gcacataaaccattg----gccaggcaacataagtcatcttgtttttacagcgatgcgtttg-catg-catgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCGGTGCTGGACGGCACCTCCACGTGGCACTTCATGTCCTCCTGGGCCGAGC
                                                     ||||   |  |  |  | ||   | |||     | ||  || |       |   |    |  | || ||     |  | || |  |   | || ||||    ||||||||| ||||| |  || || || ||  |||| ||||| ||||||||||| || || ||||| |||||||||||||||||||||  ||| ||||||||  
gtaacaatttatttatttatttattttctattaaaagtggtcatatgactttggtacaaaaggaatgatttccca-atagttgaaaagatggactagaacaaagtttgttgtcccaggttattcaactgcttcaactgtttttctgtcatgatccgcagTTCACCAAGCTAAGAGATGGCCTCGCAATGGGATGCGCGTTCAACCACGCTGTCCTCGACGGTACCTCCACGTGGCACTTCATGAGCTCGTGGGCCGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149015192|gb|EE044971.2|EE044971
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTTCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|71439435|gb|DR820485.1|DR820485
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|78110226|gb|DV528641.1|DV528641
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|71439243|gb|DR820293.1|DR820293
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149110754|gb|EE190592.2|EE190592
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|71447534|gb|DR828584.1|DR828584
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|89756390|gb|DY686440.1|DY686440
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|78092469|gb|DV520843.1|DV520843
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|78107508|gb|DV525926.1|DV525926
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|76923144|gb|DV169355.1|DV169355
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCACCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149075712|gb|EE164257.2|EE164257
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|78120194|gb|DV538578.1|DV538578
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|74243923|gb|DT651837.1|DT651837
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148986772|gb|EE030567.2|EE030567
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149110240|gb|EE190303.2|EE190303
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149101555|gb|EE187680.2|EE187680
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149069875|gb|EE158271.2|EE158271
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149102704|gb|EE288054.2|EE288054
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|76015072|gb|DT942242.1|DT942242
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|89760453|gb|DY688858.1|DY688858
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149087146|gb|EE176684.2|EE176684
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|74237258|gb|DT645172.1|DT645172
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148971834|gb|EE022584.2|EE022584
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149084860|gb|EE174365.2|EE174365
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|91874429|gb|EB404386.1|EB404386
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148987717|gb|EE031611.2|EE031611
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149103284|gb|EE288660.2|EE288660
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149112251|gb|EE295155.2|EE295155
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|211277544|gb|FL199523.1|FL199523
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149070584|gb|EE158989.2|EE158989
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149107943|gb|EE292300.2|EE292300
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149009051|gb|EE041227.2|EE041227
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCCTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCCTTCA-CCACGC
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCC-TTCAACCACGC
EST: gi|78082705|gb|DV511105.1|DV511105
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149099995|gb|EE186047.2|EE186047
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148969475|gb|EE020289.2|EE020289
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|71448717|gb|DR829767.1|DR829767
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149087983|gb|EE177205.2|EE177205
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148941746|gb|EC886701.2|EC886701
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|74238668|gb|DT646582.1|DT646582
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|211279348|gb|FL199534.1|FL199534
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149099362|gb|EE185398.2|EE185398
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148956274|gb|EC902073.2|EC902073
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|88757191|gb|DY541332.1|DY541332
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149099421|gb|EE185460.2|EE185460
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|71421917|gb|DR805595.1|DR805595
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148938003|gb|EC882243.2|EC882243
EST:     CGGCGTCATGAACCTCGAGGGCCTCCGCCTGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CGGCGTCATGAACCTCGAGGGCCTCCGCC-GCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|91873432|gb|EB403389.1|EB403389
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|50328890|gb|CO524016.1|CO524016
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149076928|gb|EE165584.2|EE165584
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|71764798|gb|DR962735.1|DR962735
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149084809|gb|EE174311.2|EE174311
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|71314277|gb|DR793757.1|DR793757
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|78107164|gb|DV525582.1|DV525582
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|71323489|gb|DR798402.1|DR798402
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|71437449|gb|DR818499.1|DR818499
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149013918|gb|EE043416.2|EE043416
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|78080531|gb|DV508943.1|DV508943
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|78085368|gb|DV513761.1|DV513761
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGGTGCGCCTTCAACCACGC
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGG-TGCGCCTTCAACCACGC
EST: gi|149042740|gb|EE047257.2|EE047257
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|211279342|gb|FL199528.1|FL199528
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAA-GCTCAAGGACGGTCTGGGCGGTGGGGTGCGCCTTCAACCACGC
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGG-CGGTGGGGTGCGCCTTCAACCACGC
EST: gi|148934002|gb|EC878003.2|EC878003
EST:     CGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149113242|gb|EE294948.2|EE294948
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|50329892|gb|CO525018.1|CO525018
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|89248416|gb|DY620202.1|DY620202
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCCA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|78118140|gb|DV536527.1|DV536527
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148943815|gb|EC888890.2|EC888890
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148940022|gb|EC884761.2|EC884761
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148932196|gb|EC875673.2|EC875673
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|101386452|gb|EB815243.1|EB815243
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|78116308|gb|DV534695.1|DV534695
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTTCAACCACGC
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTT-CAACCACGC
EST: gi|76016125|gb|DT943295.1|DT943295
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148963881|gb|EE014990.2|EE014990
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|78120484|gb|DV538868.1|DV538868
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149108757|gb|EE292950.2|EE292950
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|76917692|gb|DV166958.1|DV166958
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149097944|gb|EE183886.2|EE183886
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|88756181|gb|DY540322.1|DY540322
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|74237759|gb|DT645673.1|DT645673
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|91874589|gb|EB404546.1|EB404546
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148955804|gb|EC901489.2|EC901489
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149042051|gb|EE047027.2|EE047027
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|101384109|gb|EB814109.1|EB814109
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|149083778|gb|EE173144.2|EE173144
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|148995203|gb|EE034468.2|EE034468
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
EST: gi|50328056|gb|CO523182.1|CO523182
EST:     CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAA                         TTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG
genomic: CCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 104

GGACTGCAGCGACGAGGCGGAGAAGGTCTTGCAGCACCTCGTGCCCTACACCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCGGTGCTGGACGGCACCTCCACGTGGCACTTCATGTCCTCCTGGGCCGAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 98

GGACTGCAGCGACGAGGCGGAGAAGGTCTTGCAGCACCTCGTGCCCTACACCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCGGTGCTGGACGGCACCTCCACGTGGCACTTCATGTCCTCCTGGGCCGAGC


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 10

GGACTGCAGCGACGAGGCGGAGAAGGTCTTGCAGCACCTCGTGCCCTACACCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCGGTGCTGGACGGCACCTCCACGTGGCACTTCATGTCCTCCTGGGCCGAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 246

GGACTGCAGCGACGAGGCGGAGAAGGTCTTGCAGCACCTCGTGCCCTACACCGGCGTCATGAACCTCGAGGGCCTCCGCCGCCCGCTTCTCGCCGTCCAAgtgagtgccg ... atgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCGGTGCTGGACGGCACCTCCACGTGGCACTTCATGTCCTCCTGGGCCGAGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggccaggcaacataagtcatcttgtttttacagcgatgcgtttgcatgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCGGTGCTGGACGGCACCTCCACGTGGCACTTCATGTCCTCCTGGGCCGAGC
                     ttgttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caagtaccccaacagcggctgcctgtacagtgcacataaaccattggccaggcaacataagtcatcttgtttttacagcgatgcgtttgcatgcatgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCGGTGCTGGACGGCACCTCCACGTGGCACTTCATGTCCTCCTGGGCCGAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - -cccaaca
- - - - - - - gcggctg
- - - - - - - - - - - ctgtaca
- - - - - - - - - - - - - - - -gcacata
- - - - - - - - - - - - - - - - - - - - - - - gccaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - -aacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgatgc