1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttaggggtctggactctcagttattttttgtgatgctagattccagggattgtcttttcagaaatctagagctaataattgtacgtgcatttgcatacagGCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTTCTCGTACCACCAGAACTAGAGTTCCTAGTTGGGCCAATCTCGTTCTCTG
species | Zea mays |
transcript | GRMZM2G179696_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGAGTTACAGACGATACTAAG GCTTTTGAAGGAGCGTGGACTGCTGCCTGCAAAAAGGGGGCATGTACAGTTEST: gi|101393354|gb|EB818608.1|EB818608
genomic: CGGAGTTACAGACGATACTAAGgtacatagct ... ttgcatacagGCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTT
EST: ATGTGGTTGATTTTGGAGCCAAGGGTGACGGAGTTACAGACGATACTAAG GCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTTEST: gi|148957360|gb|EC903409.2|EC903409
genomic: ATGTGGTTGATTTTGGAGCCAAGGGTGACGGAGTTACAGACGATACTAAGgtacatagct ... ttgcatacagGCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTT
EST: ATGTGGTTGATTTTGGAGCCAAGGGTGACGGAGTTACAGACGATACTAAG GCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTTEST: gi|148980217|gb|EE027018.2|EE027018
genomic: ATGTGGTTGATTTTGGAGCCAAGGGTGACGGAGTTACAGACGATACTAAGgtacatagct ... ttgcatacagGCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTT
EST: ATGTGGTTGATTTTGGAGCCAAGGGTGACGGAGTTACAGACGATACTAAG GCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTTEST: gi|211155014|gb|FL170448.1|FL170448
genomic: ATGTGGTTGATTTTGGAGCCAAGGGTGACGGAGTTACAGACGATACTAAGgtacatagct ... ttgcatacagGCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTT
EST: ATGTGGTTGATTTTGGAGCCAAGGGTGACGGAGTTACAGACGATACTAAG GCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGEST: gi|148941522|gb|EC886453.2|EC886453
genomic: ATGTGGTTGATTTTGGAGCCAAGGGTGACGGAGTTACAGACGATACTAAGgtacatagct ... ttgcatacagGCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGG
EST: ATGTGGTTGATTTTGGAGCCAAGGGTGACGGAGTTACAGACGATACTAAG GCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTT
genomic: ATGTGGTTGATTTTGGAGCCAAGGGTGACGGAGTTACAGACGATACTAAGgtacatagct ... ttgcatacagGCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTT
gggattgtcttttcagaaatctagagctaataattgtacgtgcatttgcatacagGCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTTCTCGTACCACCAGAACTAGAGTTCCTAGTTGGGCCAATCTCGTTCTCTG
agctaat putative branch site (score: 9)
taataattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggggtctggactctcagttattttttgtgatgctagattccagggattgtcttttcagaaatctagagctaataattgtacgtgcatttgcatacagGCTTTTGAAGGAGCGTGGGCTGCTGCCTGCAAAAAGGGGGCATGTACAGTTCTCGTACCACCAGAACTAGAGTTCCTAGTTGGGCCAATCTCGTTCTCTG
- - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgtgca