1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atattgctattatataaactggctgtggcaggatgttgtggtgatttggttgcttaatagctttgatggataatttattggttcctgttccatttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTGGGCCTTTCGTCGGGCTGTGTTTCTTCTCAAGTCAAACAAGAGCAGCCTC
species | Zea mays |
transcript | GRMZM2G179308_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTGEST: gi|211232066|gb|FL290153.1|FL290153
genomic: GGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
EST: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCGTTGEST: gi|211192902|gb|FL091618.1|FL091618
genomic: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
EST: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCGTTGEST: gi|211230015|gb|FL290150.1|FL290150
genomic: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
EST: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTGEST: gi|211232070|gb|FL290157.1|FL290157
genomic: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
EST: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGTTGCAGCGTTG
genomic: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
ttggttgcttaatagctttgatggataatttattggttcctgttccatttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTGGGCCTTTCGTCGGGCTGTGTTTCTTCTCAAGTCAAACAAGAGCAGCCTC
ttcctgttccattttt CT-rich tract
atggataatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattgctattatataaactggctgtggcaggatgttgtggtgatttggttgcttaatagctttgatggataatttattggttcctgttccatttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTGGGCCTTTCGTCGGGCTGTGTTTCTTCTCAAGTCAAACAAGAGCAGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG