1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttacattcaaatttcctcagattctgatgggcctaataaaaaatgatttggctagcaacttaatatacatttttatttagcagtgcttatgaattgcagATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTACTAGCTGGTTTATCTTCAAACGACTATGATGGAAGTTTTGAGGATGAGG
species | Zea mays |
transcript | GRMZM2G179281_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCG ATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTAEST: gi|211297396|gb|FL321272.1|FL321272
genomic: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCGgtaagctccg ... tgaattgcagATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTA
EST: TGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCG ATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTAEST: gi|211101808|gb|FL362946.1|FL362946
genomic: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCGgtaagctccg ... tgaattgcagATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTA
EST: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCG ATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTAEST: gi|50324484|gb|CO519610.1|CO519610
genomic: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCGgtaagctccg ... tgaattgcagATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTA
EST: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCG ATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTAEST: gi|32919451|gb|CF024263.1|CF024263
genomic: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCGgtaagctccg ... tgaattgcagATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTA
EST: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCG ATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTAEST: gi|71772785|gb|DR970710.1|DR970710
genomic: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCGgtaagctccg ... tgaattgcagATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTA
EST: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCG ATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTAEST: gi|50324921|gb|CO520047.1|CO520047
genomic: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCGgtaagctccg ... tgaattgcagATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTA
EST: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCG ATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTA
genomic: GGTTCCGAATTCCGACACGACATCGCCAAATTCCTGGAGGCCAAAACGCGgtaagctccg ... tgaattgcagATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTA
gatttggctagcaacttaatatacatttttatttagcagtgcttatgaattgcagATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTACTAGCTGGTTTATCTTCAAACGACTATGATGGAAGTTTTGAGGATGAGG
acttaat putative branch site (score: 21)
tagcaacttaatatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacattcaaatttcctcagattctgatgggcctaataaaaaatgatttggctagcaacttaatatacatttttatttagcagtgcttatgaattgcagATGGAACTCCCAGATGAAAGAGTACAAGTAGATGCACTGGAGAGACACTTACTAGCTGGTTTATCTTCAAACGACTATGATGGAAGTTTTGAGGATGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - cattcaa
- - - - - - - - - - - - ctgatgg
- - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagtgc