1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atcaaactcaatgcccttcgtatgctacaggatgctttatttttttatacatctgttttactattgcaatgccatttaactttgctgatattcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTGTTTCTCACCATATTCCTTATTCTTGCACCAGTGGTGGTCTTCTGCATAT
species | Zea mays |
transcript | GRMZM2G179002_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCGA-GGAAGCAAC GAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTGEST: gi|211338611|gb|FL266221.1|FL266221
genomic: CGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGC-ATGGAAGCAACgtgagccctc ... ttcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTG
EST: CGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCGA-GGAAGCAAC GAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTGEST: gi|148936630|gb|EC880754.2|EC880754
genomic: CGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGC-ATGGAAGCAACgtgagccctc ... ttcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTG
EST: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAAC ---TTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTGEST: gi|91054809|gb|EB165227.1|EB165227
genomic: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAACgtgagccctc ... ttcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTG
EST: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAAC GAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTGEST: gi|211247328|gb|FL045401.1|FL045401
genomic: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAACgtgagccctc ... ttcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTG
EST: CGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCGA-GGAAGCAAC GAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTGEST: gi|148992698|gb|EE033657.2|EE033657
genomic: CGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGC-ATGGAAGCAACgtgagccctc ... ttcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTG
EST: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAAC GAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTGEST: gi|149009674|gb|EE041607.2|EE041607
genomic: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAACgtgagccctc ... ttcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTG
EST: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAAC GAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTGEST: gi|148947125|gb|EC892437.2|EC892437
genomic: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAACgtgagccctc ... ttcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTG
EST: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAAC GAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTGEST: gi|149111808|gb|EE190960.2|EE190960
genomic: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAACgtgagccctc ... ttcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTG
EST: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAAC GAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTG
genomic: GCGCTGCCGGAGAGCAGCCGAGGGTTTACCAAGTTTGGCATGGAAGCAACgtgagccctc ... ttcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTG
tatacatctgttttactattgcaatgccatttaactttgctgatattcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTGTTTCTCACCATATTCCTTATTCTTGCACCAGTGGTGGTCTTCTGCATAT
tgctgat putative branch site (score: 3)
tattcttttc CT-rich tract
ttttactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaaactcaatgcccttcgtatgctacaggatgctttatttttttatacatctgttttactattgcaatgccatttaactttgctgatattcttttcagGAGTTTTTCTTGCAAGGCCGGTTCATATTTGGACCTGATGTGAGATCCTTGTTTCTCACCATATTCCTTATTCTTGCACCAGTGGTGGTCTTCTGCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - aactcaa
- - - - - -tgccctt
- - - - - - - - - - - -gctacag
- - - - - - - - - - - - - - - gatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - -tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat