1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttcgcctaagatttatcggtttgatccttgggaagttagtcgcttctatcctcctgaagcgacagagcttcaacctgtgctctcctgtcgttcttccagGTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATTCTCGCTGTCGCCGTCACGGAGAAGGATCTGTCCAAGGACGCGGACTCCA
species | Zea mays |
transcript | GRMZM2G178958_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAACCCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAG GTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATTEST: gi|148972721|gb|EE023682.2|EE023682
genomic: CGAACCCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAGgtctgtcatc ... gttcttccagGTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATT
EST: CGAACCCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAG GTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATTEST: gi|149026812|gb|EE046172.2|EE046172
genomic: CGAACCCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAGgtctgtcatc ... gttcttccagGTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATT
EST: CCGAACCCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAG GTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATTEST: gi|148982560|gb|EE028381.2|EE028381
genomic: CCGAACCCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAGgtctgtcatc ... gttcttccagGTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATT
EST: CCGAACCCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAG GTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATTEST: gi|110519120|gb|EE023707.1|EE023707
genomic: CCGAACCCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAGgtctgtcatc ... gttcttccagGTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATT
EST: CCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAG GTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATTEST: gi|149100981|gb|EE187078.2|EE187078
genomic: CCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAGgtctgtcatc ... gttcttccagGTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATT
EST: CCGAACCCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAG GTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATT
genomic: CCGAACCCGCTCTCGGACTCACCAAGCCCAACGCCGTCGAGCCGCCTCAGgtctgtcatc ... gttcttccagGTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATT
tctatcctcctgaagcgacagagcttcaacctgtgctctcctgtcgttcttccagGTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATTCTCGCTGTCGCCGTCACGGAGAAGGATCTGTCCAAGGACGCGGACTCCA
ctctcctgtcgttctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcgcctaagatttatcggtttgatccttgggaagttagtcgcttctatcctcctgaagcgacagagcttcaacctgtgctctcctgtcgttcttccagGTCACCTTTTCCGCGAAAGACATCGAATTCTCCGAGTGGAAGGGCGATATTCTCGCTGTCGCCGTCACGGAGAAGGATCTGTCCAAGGACGCGGACTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA