1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgttaggtgtgctgaacatgtatgtgcttcaacattttgtagccccccccctagtgattgctatgttcaaggcttatctttttttcccttccaatacagAATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGCAGTGACAAGAACACATTGAAACGTTGGTTTTTCATTGACAAGAGGCTTG
species | Zea mays |
transcript | GRMZM2G178546_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCG AATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGCEST: gi|91871882|gb|EB401839.1|EB401839
genomic: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCGgtaaggcttc ... tccaatacagAATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGC
EST: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCG AATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGCEST: gi|211494512|gb|FL429952.1|FL429952
genomic: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCGgtaaggcttc ... tccaatacagAATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGC
EST: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCG AATGCAGGGCCCTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGCEST: gi|211365574|gb|FL253436.1|FL253436
genomic: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCGgtaaggcttc ... tccaatacagAATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGC
EST: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCG AATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGCEST: gi|149101959|gb|EE287477.2|EE287477
genomic: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCGgtaaggcttc ... tccaatacagAATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGC
EST: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCG AATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGCEST: gi|89252928|gb|DY624714.1|DY624714
genomic: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCGgtaaggcttc ... tccaatacagAATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGC
EST: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCG AATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGCEST: gi|148937901|gb|EC882124.2|EC882124
genomic: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCGgtaaggcttc ... tccaatacagAATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGC
EST: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCG AATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGCEST: gi|93281239|gb|EB673503.1|EB673503
genomic: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCGgtaaggcttc ... tccaatacagAATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGC
EST: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCG AATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGC
genomic: GCCTCGCCGGCGCCGGCATTGGATATAACCTCGCCCGCTACCTCCGTCCGgtaaggcttc ... tccaatacagAATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGC
ccccccctagtgattgctatgttcaaggcttatctttttttcccttccaatacagAATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGCAGTGACAAGAACACATTGAAACGTTGGTTTTTCATTGACAAGAGGCTTG
cttatctttttttccc CT-rich tract
ttatcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttaggtgtgctgaacatgtatgtgcttcaacattttgtagccccccccctagtgattgctatgttcaaggcttatctttttttcccttccaatacagAATGCAGGGCCTTGATATTTAATGGGCTGGAGGTGGTACATGCATGTTCGCAGTGACAAGAACACATTGAAACGTTGGTTTTTCATTGACAAGAGGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG