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gtaaatttgggcttcaggcttgcttaatttggtatacgttctgtttgatcttaacatgccgctttcgttatgcagCTGTGCTTTCAGCAGAAGAGGCTAGATTGTGGAGTGTTGTTACTGCAAATTGCTTAGATTTCAATGCCTGGACCACACTTATTGAGGAGACGGAGAAAAA
species | Zea mays |
transcript | GRMZM2G178294_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCGTCACCGAGATAGGCGAGCCGGTTCCTGAGCCATCCTACGAGGAAG CTGTGCTTTCAGCAGAAGAGGCTAGATTGTGGAGTGTTGTTACTGCAAATTEST: gi|71429067|gb|DR810117.1|DR810117
genomic: AGCCGTCACCGAGATAGGCGAGCCGGTTCCTGAGCCATCCTACGAGGAAGgtaaatttgg ... cgttatgcagCTGTGCTTTCAGCAGAAGAGGCTAGATTGTGGAGTGTTGTTACTGCAAATT
EST: AGCCGTCACCGAGATAGGCGAGCCGGTTCCTGAGCCATCCTACGAGGAAG CTGTGCTTTCAGCAGAAGAGGCTAGATTGTGGAGTGTTGTTACTGCAAATT
genomic: AGCCGTCACCGAGATAGGCGAGCCGGTTCCTGAGCCATCCTACGAGGAAGgtaaatttgg ... cgttatgcagCTGTGCTTTCAGCAGAAGAGGCTAGATTGTGGAGTGTTGTTACTGCAAATT
tgcttaatttggtatacgttctgtttgatcttaacatgccgctttcgttatgcagCTGTGCTTTCAGCAGAAGAGGCTAGATTGTGGAGTGTTGTTACTGCAAATTGCTTAGATTTCAATGCCTGGACCACACTTATTGAGGAGACGGAGAAAAA
tcttaac putative branch site (score: 59)
ccgctttc putative PPT
atcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttgggcttcaggcttgcttaatttggtatacgttctgtttgatcttaacatgccgctttcgttatgcagCTGTGCTTTCAGCAGAAGAGGCTAGATTGTGGAGTGTTGTTACTGCAAATTGCTTAGATTTCAATGCCTGGACCACACTTATTGAGGAGACGGAGAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA