1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actgtatgctgcacttgcagagtttttagttctatattattcgaatctcctgcttagtcagtgttccttacagttgtcccttcaacatgcacattttcagGCAGATCAAAACCAGGCAATTTCAATGGTGTCCTATTATGCTTCATCTTCAGAACCTGCTCAAGTTCGCGGTAAAACTGTCTATATCCAATATTCAAACA
species | Zea mays |
transcript | GRMZM2G178169_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACACCATGTGCAACGTCGGCGCCAACCGTAACCAGGCATTCGTCGAGTTT GCAGATCAAAACCAGGCAATTTCAATGGTGTCCTATTATGCTTCATCTTCAEST: gi|101399658|gb|EB821675.1|EB821675
genomic: ACACCATGTGCAACGTCGGCGCCAACCGTAACCAGGCATTCGTCGAGTTTgtaagcccct ... acattttcagGCAGATCAAAACCAGGCAATTTCAATGGTGTCCTATTATGCTTCATCTTCA
EST: ACACCATGTGCAACGTCGGCGCCAACCGTAACCAGGCATTCGTCGAGTTT GCAGATCAAAACCAGGCAATTTCAATGGTGTCCTATTATGCTTCATCTTCAEST: gi|94477713|gb|EB706671.1|EB706671
genomic: ACACCATGTGCAACGTCGGCGCCAACCGTAACCAGGCATTCGTCGAGTTTgtaagcccct ... acattttcagGCAGATCAAAACCAGGCAATTTCAATGGTGTCCTATTATGCTTCATCTTCA
EST: ACACCATGTGCAACGTCGGCGCCAACCGTAACCAGGCATTCGTCGAGTTT GCAGATCAAAACCAGGCAATTTCAATGGTGTCCTATTATGCTTCATCTTCA
genomic: ACACCATGTGCAACGTCGGCGCCAACCGTAACCAGGCATTCGTCGAGTTTgtaagcccct ... acattttcagGCAGATCAAAACCAGGCAATTTCAATGGTGTCCTATTATGCTTCATCTTCA
tctcctgcttagtcagtgttccttacagttgtcccttcaacatgcacattttcagGCAGATCAAAACCAGGCAATTTCAATGGTGTCCTATTATGCTTCATCTTCAGAACCTGCTCAAGTTCGCGGTAAAACTGTCTATATCCAATATTCAAACA
tccttac putative branch site (score: 128)
cattttc putative PPT
acatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgtatgctgcacttgcagagtttttagttctatattattcgaatctcctgcttagtcagtgttccttacagttgtcccttcaacatgcacattttcagGCAGATCAAAACCAGGCAATTTCAATGGTGTCCTATTATGCTTCATCTTCAGAACCTGCTCAAGTTCGCGGTAAAACTGTCTATATCCAATATTCAAACA
- - -atgctgc
- - - - - - acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttca