1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaactatatggtatatgctgatgggtcagagtggcttgtgtaatagtttttttgataaaaaaatgtaatagttttttttgtctatccatggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGTTCACAATGCATGTGAATTTTGATAAGTTTTCTGAAG
species | Zea mays |
transcript | GRMZM2G177947_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|71438573|gb|DR819623.1|DR819623
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|76018490|gb|DT945660.1|DT945660
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|71764392|gb|DR962329.1|DR962329
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAA GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAACCCATCAAEST: gi|101390104|gb|EB816984.1|EB816984
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|76286649|gb|DV026217.1|DV026217
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCEST: gi|149076451|gb|EE165074.2|EE165074
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATC
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|74236453|gb|DT644367.1|DT644367
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|71765185|gb|DR963122.1|DR963122
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|148938916|gb|EC883275.2|EC883275
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|148965782|gb|EE016663.2|EE016663
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACNNNNNNNGCTGATGAAGCCCATCAEST: gi|149079950|gb|EE168965.2|EE168965
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAA-GCTGATGAAGCCCATCA
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|148976014|gb|EE025872.2|EE025872
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|91052862|gb|EB163280.1|EB163280
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|149008823|gb|EE041027.2|EE041027
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|148954763|gb|EC900224.2|EC900224
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|148957050|gb|EC903012.2|EC903012
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|71764979|gb|DR962916.1|DR962916
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|148934162|gb|EC878181.2|EC878181
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAEST: gi|31364599|gb|CD448954.1|CD448954
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAA
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|50329235|gb|CO524361.1|CO524361
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGEST: gi|71320447|gb|DR796968.1|DR796968
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
EST: CTCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAG GATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAGGCCCATCAG
genomic: CCCAGCTCCTCGTCGCGGACCACGGAGGCGCCACCTCAGTCAAGGCCGAGgtaggttggt ... ggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAG
agtttttttgataaaaaaatgtaatagttttttttgtctatccatggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGTTCACAATGCATGTGAATTTTGATAAGTTTTCTGAAG
ttttgat putative branch site (score: 4)
ttttgataaaaaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaactatatggtatatgctgatgggtcagagtggcttgtgtaatagtttttttgataaaaaaatgtaatagttttttttgtctatccatggtattgcagGATGGGTCAGAGTGGATATTTACAAACAAAAAAGCTGATGAAGCCCATCAGTTCACAATGCATGTGAATTTTGATAAGTTTTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - -gctgatg
- - - - - - - - - - - - - - - - - gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa