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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctagcactcgaccttatgccctgtttcaatgactccattccgaggacatgtccatgatcattgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG

Basic information

species Zea mays
transcript GRMZM2G177720_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 2
------------gttagcta-gcactcgaccttatgccctgtttcaat------gactccattccgaggacatgtccatgatcat-tgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
            || | | | |   |     ||||   |||||| | |      |  |   |   ||     |     || ||   ||   | || | |||| |||||||||||||| ||||| |||||||||||| |  | || || |||||||| ||| | ||||| || ||||||||||| || || || || || ||
gtatatctctcagtaatcaaagtttttatttttattttctgtttaattattatagtttgtgtattgaaattgttgttgtgttcgggtgattttttgtttagGATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
------------gttagctagcactcgaccttatgccctgtttcaat---gactccattccgagga-catgtccatgatcattgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
            || | | |    | ||  ||||    | |||  ||   |  |   |   ||  |         || ||       |  | |||||| ||||| |||||||| ||||| |||||||||||| |  | || || |||||||| ||| | ||||| || ||||||||||| || || || || || ||
gtatatctcttagtaatcaaagttttgattttattatttatttttatttagtttgtgtattgaaaaatgctgttgtgttcggatgatttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA11G00600.2 (Glycine max), 3'ss of exon 2
----------gttagctagcac----tcgaccttatgccctgtttcaatgactccattccgaggacatgtccatg----atcat--tgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
          ||||  ||  |     | | ||||        | | |  |      ||     |   |   ||||     | ||  |||| || | |||||| |||||||| ||||||||||| |||||||||||| |  | || || |||||||| ||| | || ||| ||||||| ||||| || || || ||||||||
gtattgatttgttatgtaatatgaatttggccttgaattgaatataataggaattgttttagtgttgttggcatgttttgttatggtgtggtgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCGTGGTTGAATTGAATGGGCGGCTGAATAAGTGTGGGGTTATTAGCCCTCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA01G45060.1 (Glycine max), 3'ss of exon 2
------------------------gttagctagcactcgacctta-tgccctgtttca-atgactccattccgaggacatgtccatgatc------attgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
                        |||  |    | | ||  | | |    |   | | | ||     || |   |   |   ||||||         |||| || | |||||| |||||||| ||||||||||| |||||||||||| |  | || || |||||||| ||| | || || |||||||| ||||| || || || ||||||||
gtatttctcaacacctctatttttgttcccccctaattgaattgaatataatagataataggaacttgtttcagtgttgttgtcatgatttgtgatggtgtggtgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCGTGGTTGAATTGAATGGCAGGCTGAATAAGTGTGGGGTTATAAGCCCTCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA11G00590.2 (Glycine max), 3'ss of exon 2
----------gttagctagcac----tcgaccttatgccctgtttca-atgactccattccgag-----gacatgtccatgatcattgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
          ||||  ||  |     | | ||||        | | | | || |   ||  | |     | |||||          |||| || | |||||| |||||||| ||||||||||| |||||||||||| |  | || || |||||||| ||| | || ||| ||||||| ||||| || || || ||||||||
gtattgatttgttatgtaatatgaatttggccttgaattgaatataataggaatttttttagtgttgttggcatgttttgttatggtgtggtgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCGTGGTTGAATTGAATGGGCGGCTGAATAAGTGTGGGGTTATTAGCCCTCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA15G10950.1 (Glycine max), 3'ss of exon 2
------gttagctagcactcgaccttatgccc-tgtttcaatgactccattccgaggacatgtccatgatcattg-tgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
      ||| | ||    ||    || |     |   |||||      | ||   |  ||| |   |   | ||| |  |||| | |||| |||||||||||||| |||||||||||||| ||| || | || || || || || ||| | || || || |||||||| || || || || || || ||
gtatttgtttgttaatcttcttttttttaataatagctcaatttggttactcttggttcatctgtttttgccttgattgtgttttctagGGTACATTGGAGAGTTTGAGTACGTTGATGATCACAGAGCTGGAAAAATTGTTGTTGAATTGAATGGTAGACTGAACAAATGTGGGGTTATTAGTCCGCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT5G59850.1 (Arabidopsis thaliana), 3'ss of exon 2
---------------gttagctagcactcgaccttatgccctgtttcaa---tgactccat-tccgaggacatgtccatgatcattgtgctgtta-tgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
                ||   |||  |||    | |     |||   ||   ||| ||  | |  ||  |  |||   | |   || || ||  | || ||| |||||||| ||||| |||||||||||||||||| | || || |||||||||||||| || || || || || ||||| || || |||||||| |||||
gtatgttgatcctgcattgtttag--ctcattttcacattttgtaataaccttgattctgtgtttgatcaactgttt-taacatttttgatgaaactgcagGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCGTGGTCGAGCTTAATGGAAGACTTAACAAATGTGGAGTCATCAGTCCTCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G07770.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagctagcactcgaccttatgccctgtttcaatgactcc----attccgaggacatgtccatgatcattgtgctgtta---------tgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
       |  |  | |||  ||    | |   |  || |||    ||||   |    ||| | | |  ||| ||  ||||         || ||| |||||||| ||||| ||||| || ||||||||| |||| ||||||||||| || ||| | ||||| ||| |||||||||| || || |||||||| ||
--gtatgattatcccaccagattttatataatagagattcctaagattctcggatgttgttccttaa-attatgtggttaccaatcaaatgcagGTTACATTGGTGAGTTTGAGTATGTCGATGACCACAGATCTGGCAAGATCGTCGTTGAATTGAACGGAAGGTTGAACAAGTGTGGTGTTATCAGCCCACG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G46040.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagctagcactcgaccttatgccctgtttcaatgactccattccgaggacatgtcca-tgatcattgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
||  ||||| |      |  | ||     ||  ||  ||  || | |    || ||  | ||||  || |  || | | |||| |||||||| ||||| ||||| |||||||||||| | || || ||||| || || || || || || |||||||||||||| || || ||||| |||||
gtatgctagtaactttgcaga-gctagcgtttgattcctgtatacagttttcaagtgtaatgatgcttct--tggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGAGTTATCAGTCCTCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S426_18V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------gttagcta--gcactcgaccttatgccct---gtttcaatgactccattccgaggacatgtccatgatcattgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
               | | |||    | |  ||  | |  | |   || | | |  |  ||||   ||   ||     |     || ||    | |  ||| || ||||||||||| |||   ||||||||||||||| | |||||||| ||||| || ||||| || ||  ||||||||||||| |||||||| |||||
ctctctctctctctctcatctacgaaaataaactatttatcttcgcgtctaagttgcagcattgatagcggatcgttttctctcttttggctcttttcagGTTATATTGGAGAGTTTGAGCTTGTTGATGACCACCGAGCTGGCAAGATTGTGGTAGAGCTCAATGGAAGATTGAACAAGTGCGGTGTCATCAGTCCTCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S45_88V6.2 (Physcomitrella patens), 3'ss of exon 1
-------gttagctagcactcgacctta--tgccctgtttcaatgact--ccattccgaggacatgtccatgatcatt--gtgctgttatgt------agGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
       ||   |      | ||  ||   |  ||||||    ||  |  | |  | || || || ||  |||  | |  ||| | |  |||      ||| ||||||||||| || |||   || |||||||||||| | || |||||||| || || || || || ||| ||||||||||||| |||||||| || ||
tgtttttgtcttccccttatggaatttggttatcctgttagcgtgctttacaacgctgaagaaatctctctgactaattagtgttctcctgtctttttagGATACATTGGAGAATTTGAGCTGGTAGATGACCACCGAGCTGGAAAGATCGTAGTGGAGCTTAATGGCAGGTTGAACAAGTGCGGTGTCATCAGTCCCCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S61_209V6.1 (Physcomitrella patens), 3'ss of exon 1
-----------gttagctagcactcgaccttatgccctgtttcaatgactccattccgaggac--------atgtccatgatca-ttgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
             |   ||  | | | || | | |  ||||   |  | |  ||| ||||||         |||    || | | || ||   || |  ||| |||||||| ||||||||    ||||||||||| ||| | |||||||| ||||| || |||||||| ||  |||||||||| || || ||||| |||||
tctttttttcttctgtataagagtggtccatct-ctgtgttatcagtattgtattgcgaggaattacaagaatgatgctgtttacttctgaattttttcagGGTACATTGGGGAGTTCGAACTGGTTGATGACCATCGAGCTGGCAAGATTGTGGTAGAGCTCAACGGTAGATTGAACAAGTGTGGTGTAATCAGTCCTCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ26253 (Selaginella moellendorffii), 3'ss of exon 1
gttagctagcactcgaccttatgccctgtttcaatgactccattccgaggacatgtccatgatcattgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
                      |     | |    || | | ||  |  | | | ||     ||||  |  ||      ||||||||| || ||||| ||||  || || || ||| |||| || |||||||| ||||| || ||||| ||||| |||||||| || ||||||||||| ||
----------------------gtaagatcttcgcgaattccttttg--gtcgtttct----tcatccttttgcgcatcagGCTACATCGGCGAGTTTGAGTGGGTCGACGATCACAGATCCGGGAAGATCGTCGTCGAGCTAAACGGCAGGCTCAACAAGTGTGGAGTCATCAGCCCGCG

upper sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ14550 (Selaginella moellendorffii), 3'ss of exon 1
gttagctagcactcgaccttatgccctgtttcaatgactccattccgaggacatgtccatgatcattgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
                   || |  ||   ||    | ||| ||  |      | | |||  || | | ||    ||  ||||||||| || ||||| ||||  || || || ||| |||| || |||||||| ||||| || ||||| ||||| |||||||| || ||||||||||| ||
------------------gtaagatct---tcgcgaattcctttttggttgtttcttcatcctc-tcgcgc----at-cagGCTACATCGGCGAGTTTGAGTGGGTCGACGATCACAGATCCGGGAAGATCGTCGTCGAGCTAAACGGCAGGCTCAACAAGTGTGGAGTCATCAGCCCGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29131046|gb|CB381750.1|CB381750
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCCCG                         GCTACCTTGGAGAGTTCGAGTACGTTGATGACCCCCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|4753545|gb|AI657455.1|AI657455
EST:     GCCGTCATCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATTG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|14701336|gb|BI233754.1|BI233754
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|87152142|gb|DY396931.1|DY396931
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|71448099|gb|DR829149.1|DR829149
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211249523|gb|FL044497.1|FL044497
EST:     GCCGTCATCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATTG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|31997995|gb|CD661867.1|CD661867
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|166529845|gb|EG310297.1|EG310297
EST:     CCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATC
genomic: CCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGA-GAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATC
EST: gi|9255183|gb|BE345651.1|BE345651
EST:     GCCGTCATCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATTG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|29544673|gb|CB605053.1|CB605053
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|31611995|gb|CD568617.1|CD568617
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|29130978|gb|CB381682.1|CB381682
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCCCG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCCCCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211522808|gb|FL109130.1|FL109130
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211388783|gb|FL109051.1|FL109051
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|4886089|gb|AI677209.1|AI677209
EST:     GCCGTCATCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATTG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|31358492|gb|CD442849.1|CD442849
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|22491237|gb|BU051160.1|BU051160
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211270075|gb|FL108984.1|FL108984
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|12970751|gb|BG267140.1|BG267140
EST:     GCCGTCATCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATTG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211394053|gb|FL109083.1|FL109083
EST:     GCCGTCATCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATTG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211525823|gb|FL109152.1|FL109152
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTTC-AGTACGTTGATGACCACCGATCGGGCAAGATC
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTT-CGAGTACGTTGATGACCACCGATCGGGCAAGATC
EST: gi|40337348|gb|CK371418.1|CK371418
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|89250090|gb|DY621876.1|DY621876
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTGGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|60394062|gb|DN226932.1|DN226932
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|101392168|gb|EB818012.1|EB818012
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211525824|gb|FL109153.1|FL109153
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCCAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|166692511|gb|EG306568.1|EG306568
EST:     CCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: CCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|29544365|gb|CB604745.1|CB604745
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211525816|gb|FL109145.1|FL109145
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATTACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|31997991|gb|CD661866.1|CD661866
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211519801|gb|FL109121.1|FL109121
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATACAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|60396424|gb|DN229293.1|DN229293
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|28910930|gb|CB331686.1|CB331686
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCCCG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCCCCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|60396127|gb|DN228996.1|DN228996
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|9952453|gb|BE639036.1|BE639036
EST:     GCCGTCATCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATTG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|213175371|gb|FM190166.1|FM190166
EST:     GCCGTCATCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATTG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211386149|gb|FL109037.1|FL109037
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|113675952|gb|DW831497.1|DW831497
EST:     ATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: ATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211391424|gb|FL109066.1|FL109066
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|14701335|gb|BI233753.1|BI233753
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|211386160|gb|FL109048.1|FL109048
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|101392170|gb|EB818013.1|EB818013
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|60339757|gb|DN206730.1|DN206730
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGCTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|29945118|gb|CB815478.1|CB815478
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|9953673|gb|BE640256.1|BE640256
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|14883485|gb|BI273372.1|BI273372
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|14243692|gb|BG841342.2|BG841342
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
EST: gi|60341292|gb|DN208265.1|DN208265
EST:     GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACG                         GCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG
genomic: GCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 536

AAGTCCATGTACAACGCTGAGAAGATCGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 300

AAGTCCATGTACAACGCTGAGAAGATCGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 242

AAGTCCATGTACAACGCTGAGAAGATCGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 169

AAGTCCATGTACAACGCTGAGAAGATCGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagc ... tgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcaatgactccattccgaggacatgtccatgatcattgtgctgttatgtagGCTACATTGGAGAGTTCGAGTACGTTGATGACCACCGATCGGGCAAGATCGTGGTCGAACTCAACGGGAGGCTGAACAAGTGCGGCGTCATCAGCCCTCG
                                               ttatgta  TA-rich tract