1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagcaacctcggattgtaaggcatctgtctctgtctgtcagaattgtgtatgtttgcgtttccgtgtctgagaatttcaccagaaaattatttcctcttgattctggtgtagTTTGCACTATGCTCTTGTGACCGTTGGCACACCGGGCCAGACGTTCATGGTGGCGCTGGACACAGGCAGCGATCTCTTCTGGCTGCCTTGCCAGTGTGAC
species | Zea mays |
transcript | GRMZM2G177575_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGCGACGCACCACCGCTCACTTTCGCCGAGGGAAATGCCACCCTCAAG TTTGCACTATGCTCTTGTGACCGTTGGCACACCGGGCCAGACGTTCATGGTEST: gi|149060792|gb|EE157243.2|EE157243
genomic: GCAGCGACGCACCACCGCTCACTTTCGCCGAGGGAAATGCCACCCTCAAGgtcagcaacc ... tctggtgtagTTTGCACTATGCTCTTGTGACCGTTGGCACACCGGGCCAGACGTTCATGGT
EST: GCAGCGACGCACCACCGCTCACTTTCGCCGAGGGAAATGCCACCCTCAAG TTTGCACTATGCTCTTGTGACCGTTGGCACACCGGGCCAGACGTTCATGGTEST: gi|149106838|gb|EE188736.2|EE188736
genomic: GCAGCGACGCACCACCGCTCACTTTCGCCGAGGGAAATGCCACCCTCAAGgtcagcaacc ... tctggtgtagTTTGCACTATGCTCTTGTGACCGTTGGCACACCGGGCCAGACGTTCATGGT
EST: GCAGCGACGCACCACCGCTCACTTTCGCCGAGGGAAATGCCACCCTCAAG TTTGCACTATGCTCTTGTGACCGTTGGCACACCGGGCCAGACGTTCATGGT
genomic: GCAGCGACGCACCACCGCTCACTTTCGCCGAGGGAAATGCCACCCTCAAGgtcagcaacc ... tctggtgtagTTTGCACTATGCTCTTGTGACCGTTGGCACACCGGGCCAGACGTTCATGGT
gtttccgtgtctgagaatttcaccagaaaattatttcctcttgattctggtgtagTTTGCACTATGCTCTTGTGACCGTTGGCACACCGGGCCAGACGTTCATGGTGGCGCTGGACACAGGCAGCGATCTCTTCTGGCTGCCTTGCCAGTGTGAC
tcttgat putative branch site (score: 6)
tttcctcttgattct CT-rich tract
agaaaattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcaacctcggattgtaaggcatctgtctctgtctgtcagaattgtgtatgtttgcgtttccgtgtctgagaatttcaccagaaaattatttcctcttgattctggtgtagTTTGCACTATGCTCTTGTGACCGTTGGCACACCGGGCCAGACGTTCATGGTGGCGCTGGACACAGGCAGCGATCTCTTCTGGCTGCCTTGCCAGTGTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA