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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

Basic information

species Zea mays
transcript GRMZM2G177005_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g06890.2 (Oryza sativa), 3'ss of exon 1
tggtccgatcgggtgtcag-tctgtcggattccagaaagcggtgggcttt---ttcggtcgggcagttgctgactaggctgtta--ttttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
    ||||| ||   || | | ||| ||     | ||||  | | |||||   ||| ||     |   |  || | |  | ||   |||   | |||| |  ||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||
----ccgattggagatcggatttgtggggaa--aaaaagttgggagctttggattctgttcttgatggggggatttgcttatttgctttcattcgatctgttgcagGCATGGGTGCGGCGTACGGGACGGCGAAGAGCGGCGTCGGCGTGGCGTCCATGGGCGTGATGCGCCCGGAGCTCGTGATGAAGTCCATCGTGCCCGTGGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA13G03470.1 (Glycine max), 3'ss of exon 1
-------------------------------------------------------------------------------------tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttc----ggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                                                                                     | ||  | |     || | | |       |      | | ||   |  || |    | |     | |   | | |  |  | | ||||  || ||     | ||| ||||| || ||||| || || |||||||| || || || |||||||||||||| |||||| |||||||||| || |||||||| |||||||| |||||
gttcgtcactctctttttatttgtaaaattttattcaatataacgataacaataataataataatattagggtctagatctatcgtagttggttgaacagttattgtaaaaacctttttgtacctgtcttcgattgctacagattaaaaaatgatttattctgtggctgttttattttatgattggtagGTATGGGAGCGGCGTATGGAACGGCGAAGAGTGGGGTGGGGGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G05630.2 (Glycine max), 3'ss of exon 1
tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcggg-cagttgctgactaggctgt-----tattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
        |        |     ||  ||   |||      |  |  |  |    ||   | || |  |  |   ||       | | | | ||         |||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| |||||||||| || ||||| || |||||||| || ||
-------gtaactaactaactcatcaaatcaaagagttttttttgtctcatttcccgaaaccgtcgtcgttttatcttaaaccgtgtgtcgtttttgttttttcagGTATGGGCGCGGCGTACGGCACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA14G23990.1 (Glycine max), 3'ss of exon 1
----------------------------------------------------------------------------------tggtccgatcgggtgtcagtctgtcgga--ttccagaaagcggtgggctttttcggtcgggcagttgctgacta------ggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                                                                                  |     | ||  | || |||   |   |  || | |  | | ||     ||   | |     |  |      ||      |||  |||||||  || ||     | ||| ||||| || |||||||| || || ||||| || || || |||||||||||||| |||||| |||||||||| || |||||||| |||||||| |||||
gttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgataacaacaatactactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttatt-atgattggtagGTATGGGAGCGGCGTACGGAACGGCAAAGAGTGGGGTGGGGGTGGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA12G04090.1 (Glycine max), 3'ss of exon 1
----tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
    |     ||  |      |   | |  | |||    |   | |  || ||||| || |     |   | |   |    || |||    ||||  |  | ||| ||||| || || || || || |||||||| ||||| |||||||| ||||||||||||||| | |||||||| || |||||||| || || || || ||
tgtatataaagaaagaaaaagaaattctgagcttcttcgata-gctttgcattttctgtagatttatctttaatatga--attgtttgaactgatg-gaggaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA11G11760.1 (Glycine max), 3'ss of exon 1
tggtccgatcgggtgtcagtctgtcggattccaga-aagcggtgggctttttcggtcgg---gcagttgct-----gactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
        |   | ||   | |   | |   || | ||     | |||| |||| | |    ||| ||  |     || |   || | ||  |  |||||  |  | ||| ||||| || || || || || |||||||| ||||| |||||||| ||||||||||||||| | || ||||| || |||||||| || || || || ||
--------ttatgcgtatatataaagaaagacaaagaaattcagagcttcttcgttagctttgcattttttctgtagatttatctttaatactaattgatg-gatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGATGGGTGTGATGAGACCAGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
----tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagt-tgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
        |  |||   |   ||  | |    ||           |    |||      | |||    |  |  ||       | | | | ||         |||| ||||| || |||||||| |||||||||||||||||||| || ||||||||||| |||||| |||||||||| || ||||| || |||||||| || ||
gtaactaactcatcaaatcaaagagtttttttttttt----tttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 1
tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
   |  | |      |||    |  ||  |   ||   |    |         ||  |   ||  |     ||  |||   | |   || |       ||| ||||| || ||||||||||| || ||||| || || || ||||| || |||||||||||| |||||||| | || |||||||| || || || || ||
aattatgctttttcttcatatcgaaggcatgttgattacttgtgtaaaccatagttagattgtgaccttaaagagtgtgtatctttgtgttattaacaagGTATGGGAGCTGCGTACGGGACAGCAAAGAGTGGTGTGGGAGTGGCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAAGTCTATTGTCCCAGTTGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G19910.1 (Arabidopsis thaliana), 3'ss of exon 1
tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcg-----------cagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
  || | ||| | | ||  ||  |      ||         |    |||||     |    | |  |||      | | || |     ||| ||              |||| ||||| || ||||||||||| ||||||||||| || || || |||||||||||||||||| | || ||||| || ||||| || || || || || ||
--gtaccatctgatttc--tccattc--ccccgatctcttatctctttttttcccagaattgattttgatccaaatctgatctgatccgattcgatcggattatgtttcagGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGTGTAGCGTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCTGTTGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G75630.2 (Arabidopsis thaliana), 3'ss of exon 1
tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
        |  | | ||||         ||    |   |   |   |   ||   |     |||  ||| | |  |   ||     |||||      |||| ||||| || ||||||||||| |||||||| || || || || ||||||||||| |||||| | || || || || ||||| || || || || || ||
-------gtaagatttcagatccctctcttgtcaatttccccgaattgaatcacccaat--gtttttgattcgattcgaatccgatttgatgtttt-cagGTATGGGAGCAGCGTACGGGACGGCGAAGAGTGGAGTTGGAGTTGCGTCGATGGGAGTGATGAGACCTGAACTTGTTATGAAATCGATTGTTCCTGTTGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv18s0001g13630.t01 (Vitis vinifera), 3'ss of exon 1
------tggtccgatcgggtgtca-gtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
          |  | || |  | | ||| ||| |  |   |   |   | || | |   ||     ||   |  ||     ||| | ||||  |||      | |||| ||||| || || || || ||||| |||||||| || || ||||| || |||||||||||| | |||||||| || |||||||| ||||| || || ||
tctcagcaaccaaaccgaggttaatgtccgtccgtcttgggtttggatttggatctag-ggcttttcaaacgtggat----ctgattttttatttgggat--ctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCATGGGTGTGATGAGACCGGAGCTTGTTATGAAGTCGATCGTTCCAGTTGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
-tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttg---ctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
 |      ||    | ||  |||     |||     ||     || | |         |    | |   |||| | | ||||| ||||  |   |   |   ||| ||||| || ||||| || || |||||||| |||||||| |||||||||||||| |||||| |||||||||| || |||||||| || || || || ||
attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgatt-gactgttgtttttataatttttg---agGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcg-----ggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
   |||||             |||    | ||| |  |     |  |  |  ||        ||   ||  |   | |  ||||  | |  | | | |    ||||||||||||| || || ||||| || |||||||| || || ||||| || ||||| |||||||| ||||||||||||||||| || || || || || ||
---tccgacgaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatgtt--tctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 1
--------------------------------------------------------------------------------------------------tggtccgatcgg-gtgtcagtctgtcgg--attccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                                                                                                    |    | | |  ||  |||  | ||   | ||||| |  | |    || |  ||    ||| |   ||| |    |    |   | | | ||   | |||||||||||||||||||| || || || |||   ||||| ||| | || || |||||||| ||||| || ||||| |||||||||  ||| |||||||||||
gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgataaatccagcagcctgc---ctatcccgcggaggctgagtctgcccctccccgcaaacttcatcatt--gtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 3'ss of exon 1
tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctga-ctaggctgtt--attttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
    ||      |||||| | |   | |    |||    |    |    |    | |  ||||||   | |   | |  |  | |  | |      ||||||||||||||||| || || || || || || || || || || ||||| || |||||||| ||||| || ||||| || |||||||||||||| || |||||
---gccaccactgtgtcactgttgggaaagtgagacgatgtgcagtgaatcattttgtacagttgtgaaaccgcgttccttgactacgatgttgttggcgcagGCATGGGCGCTGCCTATGGAACGGCCAAAAGTGGAGTTGGAGTGGCATCTATGGGTGTCATGCGACCTGAGCTAGTGATGAAGTCCATCGTCCCAGTGGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 1
---tggtccgatcgggtgtcagtctgtcggattccagaaagc--ggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
     ||    | | | | |  |||    | ||  |   |    | |  ||||  ||| ||    |         ||  | |      |  ||||    |||||||||||||||| || || || || || ||||| || || || ||||| || ||||||||||||||||| ||||| || |||||||| |||||||| |||||
aagcagtgacgttgagggcctatcttgttgttttgaaggactttgatcagcttgctcgctctt-taccgatatgttaacccgaggaggtttttga----gcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCAGTGGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
-tggtccgatcgggtgtcagtctgtcg---gattccagaaagcggtgggctttttcggtcgggc-agttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
 | |       |  | |||   ||  |    |||     |   || | |   ||| |  |   |  |   ||||| | || ||  ||    ||||| |     |||||||||||| || || || || || ||||| || || || ||||| || ||||||||||||||||| ||| | || ||||| || |||||||| || ||
gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattc-----agGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
----tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
      |     | |||   |   || |||  | ||  |    ||        |          || |    |  |    || |   |  |||     |||||||||||||||| || || || || || ||||| || || || ||||| || ||||||||||||||||| ||||| || |||||||| ||||| || |||||
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttg----cgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 1
tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttatt-ttgcttgatccggcg-cagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
      || ||| |||  | |  |     | ||     |   |      | ||     | |  | |||   | |   | | | |||  || |   ||| ||||||||||||| || || ||||| || ||||| || || || ||||| || ||||||||||||||||| ||||| || |||||||| |||||||| |||||
-cccgtgaacgg-tgttgggcacttaagcttcaatttcctcagctagggtgcgacttcgaaactcctggacatgaactaaatgttgaatgttattgcgtcagGCATGGGCGCTGCTTATGGGACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCTGTGGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 1
tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                                 | ||||      |||||||      |      || |      ||  ||   | |  |||     |||||||||| || || || || || || ||||||||||| ||||||||||| ||||| || ||| | ||||||||||| ||||| || ||||| || |||||
---------------------------------gtaagccagattctttttcctctttgat----ctaatcgcaatgcgatg--gatcaatcgattacagGCATGGGAGCTGCCTATGGCACTGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGCGTCATGAGACCGGAGCTCGTGATGAAATCGATCGTCCCGGTGGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
-----------------------------------------------------------------------------tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctt-------tttcggtcgggcagttgctgactaggctgttattttgcttgatc--cggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                                                                               | | || |  | | ||     |||  |||| |   ||| |   |||       |  ||      |  |  |  | |   |  || | ||     ||   |   ||||||||||| || || || || ||||| ||||| || || || ||||| || ||||| |||||||||||||||||||| ||||| || |||||||| |||||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgc--gcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

upper sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
-----------------------------------------------------------------------------tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctt-------tttcggtcgggcagttgctgactaggctgttattttgcttgatc--cggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                                                                               | | || |  | | ||     |||  |||| |   ||| |   |||       |  || |    |  |  |  | |   |  || | |      ||   |   ||||||||||| || || || || ||||| ||||| || || || |||||||| ||||| |||||||||||||||||||| ||||| || |||||||| |||||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgc--gcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149069779|gb|EE158164.2|EE158164
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211467258|gb|FL205740.1|FL205740
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211462187|gb|FL205703.1|FL205703
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211467253|gb|FL205735.1|FL205735
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211472315|gb|FL205766.1|FL205766
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211459673|gb|FL205699.1|FL205699
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211467264|gb|FL205746.1|FL205746
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|32926556|gb|CF031368.1|CF031368
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGGCGGCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|71595816|gb|DR906567.1|DR906567
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|28910017|gb|CB331215.1|CB331215
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211467257|gb|FL205739.1|FL205739
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|149085640|gb|EE175154.2|EE175154
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211469781|gb|FL205751.1|FL205751
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211469779|gb|FL205749.1|FL205749
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211472320|gb|FL205771.1|FL205771
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211459668|gb|FL205694.1|FL205694
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|32850588|gb|CD990269.1|CD990269
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211459667|gb|FL205693.1|FL205693
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211472318|gb|FL205769.1|FL205769
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCCCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211459662|gb|FL205688.1|FL205688
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|149087196|gb|EE176733.2|EE176733
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211464716|gb|FL205721.1|FL205721
EST:     GGCCCCCCTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211464715|gb|FL205720.1|FL205720
EST:     GGCCCCCCTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|28909989|gb|CB331201.1|CB331201
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211464725|gb|FL205730.1|FL205730
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|15100422|gb|BI396213.1|BI396213
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGTCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|9794799|gb|BE553107.1|BE553107
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|32926631|gb|CF031443.1|CF031443
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211467263|gb|FL205745.1|FL205745
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|32835879|gb|CD975557.1|CD975557
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|149004954|gb|EE039470.2|EE039470
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211462190|gb|FL205706.1|FL205706
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211464721|gb|FL205726.1|FL205726
EST:     GGCCCCCCTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|148941578|gb|EC886515.2|EC886515
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211469782|gb|FL205752.1|FL205752
EST:     GGCCCCCTTCTTCGGCTTCCTCGGNGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGACGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211472319|gb|FL205770.1|FL205770
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGGCGTCGGCGTGNCGTCC
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGG-CGTCGGCGTGGCGTCG
EST: gi|211469791|gb|FL205761.1|FL205761
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGNCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTG
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTG
EST: gi|211462198|gb|FL205714.1|FL205714
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|149105079|gb|EE290560.2|EE290560
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211469792|gb|FL205762.1|FL205762
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211462192|gb|FL205708.1|FL205708
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCVT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211462200|gb|FL205716.1|FL205716
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211469785|gb|FL205755.1|FL205755
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211469786|gb|FL205756.1|FL205756
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211467255|gb|FL205737.1|FL205737
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211467261|gb|FL205743.1|FL205743
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCG-CG-CGCCCTCGTCTTCTCAT                         GCATTGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|47962337|gb|CN845046.1|CN845046
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAANAGCGGCGTCGGCGTGGCGTCNA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211459674|gb|FL205700.1|FL205700
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211377816|gb|FL205684.1|FL205684
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211459665|gb|FL205691.1|FL205691
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|60342949|gb|DN209922.1|DN209922
EST:     CCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: CCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211467252|gb|FL205734.1|FL205734
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211377818|gb|FL205686.1|FL205686
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCG-CGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|67017850|gb|CO446599.1|CO446599
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211459663|gb|FL205689.1|FL205689
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211464718|gb|FL205723.1|FL205723
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|32940017|gb|CF044836.1|CF044836
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211462193|gb|FL205709.1|FL205709
EST:     GGCCCCCCTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211464713|gb|FL205718.1|FL205718
EST:     GCCCCCNTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTNCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCG
genomic: GCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTT-CTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCG
EST: gi|211462194|gb|FL205710.1|FL205710
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211469778|gb|FL205748.1|FL205748
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211469780|gb|FL205750.1|FL205750
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211472325|gb|FL205776.1|FL205776
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|37396741|gb|CF635664.1|CF635664
EST:     GCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211459671|gb|FL205697.1|FL205697
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211464724|gb|FL205729.1|FL205729
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
EST: gi|211464717|gb|FL205722.1|FL205722
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGG
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGG
EST: gi|211464714|gb|FL205719.1|FL205719
EST:     GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCAT                         GCATGGGCGCTGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA
genomic: GGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 101

AACAGGAAGCCGGAGGCGAAGATGTCGTCGGTGTTCAGCGGCGATGAGACGGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 223

AACAGGAAGCCGGAGGCGAAGATGTCGTCGGTGTTCAGCGGCGATGAGACGGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 128

AACAGGAAGCCGGAGGCGAAGATGTCGTCGGTGTTCAGCGGCGATGAGACGGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 192

AACAGGAAGCCGGAGGCGAAGATGTCGTCGGTGTTCAGCGGCGATGAGACGGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccc ... tccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                              tgttatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga