Sequence
atgc intronic sequence ATGC exonic sequence...ctggggtttatagttgacttaacacttcaatgttttcactcttacacacaagtatcgaacaaaacataagtgaaccaagttgtgaatatcttgttgctagTTTGCTGTTGCAGGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G176506_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g09120.2 (Oryza sativa), 3'ss of exon 1
ctggggtttatagttgacttaacact------tcaatgttttcactcttacacacaagtatcgaacaaaacataagtgaacca--agttgtgaatatcttgttgctagTTTGCTGTTGCAGGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGA
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--------tatacttgacctggcaatgtcgcatttatttatttattttttctactgcacgttaaacattcaatacaataagcaggagttgtgaatatattgttgctagCTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGA
upper sequence: GRMZM2G176506_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g09120.1 (Oryza sativa), 3'ss of exon 1
ctggggtttatagttgacttaacacttcaatgttttcactcttacacac-aagtatcgaacaaaacataagtgaaccaagttgtgaatatcttgttgctagTTTGCTGTTGCAGGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGA-------------
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-------gcaatgtcgcatt--tatttatttattttttctactgcacgttaaacattcaatacaa--taagcagg---agttgtgaatatattgttgctagcttgctgttgcagGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGAACCGCTACAGCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acacaagtatcgaacaaaacataagtgaaccaagttgtgaatatcttgttgctagTTTGCTGTTGCAGGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGA
tcttgtt CT-rich tract
aaaacataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctggggtttatagttgacttaacacttcaatgttttcactcttacacacaagtatcgaacaaaacataagtgaaccaagttgtgaatatcttgttgctagTTTGCTGTTGCAGGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGA
- - - - - - - - - - - cacttca
- - - - - - - - - - - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaacca