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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctggggtttatagttgacttaacacttcaatgttttcactcttacacacaagtatcgaacaaaacataagtgaaccaagttgtgaatatcttgttgctagTTTGCTGTTGCAGGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGA

Basic information

species Zea mays
transcript GRMZM2G176506_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176506_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g09120.2 (Oryza sativa), 3'ss of exon 1
ctggggtttatagttgacttaacact------tcaatgttttcactcttacacacaagtatcgaacaaaacataagtgaacca--agttgtgaatatcttgttgctagTTTGCTGTTGCAGGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGA
        |||| ||||| |  || |      |  || | || | | || |         |  ||||    |||    || ||  |||||||||||| |||||||||| ||||||||||||||| |||  | |||||||| || ||| |||||||   ||||||||| |  ||| | ||||| |||||||||||  |||||||| |||
--------tatacttgacctggcaatgtcgcatttatttatttattttttctactgcacgttaaacattcaatacaataagcaggagttgtgaatatattgttgctagCTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGA

upper sequence: GRMZM2G176506_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g09120.1 (Oryza sativa), 3'ss of exon 1
ctggggtttatagttgacttaacacttcaatgttttcactcttacacac-aagtatcgaacaaaacataagtgaaccaagttgtgaatatcttgttgctagTTTGCTGTTGCAGGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGA-------------
         |  || |  ||   | ||   | ||||  ||  | |||   ||  ||  || | ||  ||||       |||||||||||| |||||||||| ||||||||||||||| |||  | |||||||| || ||| |||||||   ||||||||| |  ||| | ||||| |||||||||||  |||||||| |||             
-------gcaatgtcgcatt--tatttatttattttttctactgcacgttaaacattcaatacaa--taagcagg---agttgtgaatatattgttgctagcttgctgttgcagGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGAACCGCTACAGCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacaagtatcgaacaaaacataagtgaaccaagttgtgaatatcttgttgctagTTTGCTGTTGCAGGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGA
                                           tcttgtt  CT-rich tract
               aaaacataa  TA-rich tract