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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgacttaacacttcaatgttttcactcttacacacaagtatcgaacaaaacataagtgaaccaagttgtgaatatcttgttgctagtttgctgttgcagGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGAACAGCTACAGCAA

Basic information

species Zea mays
transcript GRMZM2G176506_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G176506_T07 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g09120.1 (Oryza sativa), 3'ss of exon 1
ttgacttaacacttcaatgttttcactcttacacacaagtatcgaaca--aaacataagtgaaccaagttgtgaatatcttgttgctagtttgctgttgcagGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGAACAGCTACAGCAA
  |   |  | | |  || | || | | || |         |  ||||   || | ||        |||||||||||| |||||||||| ||||||||||||||| |||  | |||||||| || ||| |||||||   ||||||||| |  ||| | ||||| |||||||||||  |||||||| ||||| ||||||||||
--gcaatgtcgcatttatttatttattttttctactgcacgttaaacattcaatacaataagcaggagttgtgaatatattgttgctagcttgctgttgcagGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGAACCGCTACAGCAA

upper sequence: GRMZM2G176506_T07 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g09120.2 (Oryza sativa), 3'ss of exon 1
-----ttgacttaacact------tcaatgttttcactcttacacacaagtatcgaacaaaacataagtgaacca--agttgtgaatatcttgttgctagtttgctgttgcagGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGAACAGCTACAGCAA
     ||||| |  || |      |  || | || | | || |         |  ||||    |||    || ||  |||||||||||| |||||||||| ||||||||||||||| |||  | |||||||| || ||| |||||||   ||||||||| |  ||| | ||||| |||||||||||  |||||||| |||             
tatacttgacctggcaatgtcgcatttatttatttattttttctactgcacgttaaacattcaatacaataagcaggagttgtgaatatattgttgctagCTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGA-------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaaacataagtgaaccaagttgtgaatatcttgttgctagtttgctgttgcagGGCTGGAGACCGAGGAACCACGTGTACCTAGCGATAGTGAGAAAGATATGGCAATAAGTACGGCTAACAGCATTGTCTCTGCGCTGAACAGCTACAGCAA
                          aatatctt  TA-rich tract