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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcctgtctgatccgttctcctccctttgtgtttctgctcccttgtgtgtttctgtgaaatttgtctgaacctgtttcggtttgtcgtttggtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG

Basic information

species Zea mays
transcript GRMZM2G175510_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G175510_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g34690.1 (Oryza sativa), 3'ss of exon 1
tcctgtctgatccgttctcctccctttgtgtttctgctcccttgtgtgtttctgtgaaatt-tgtctgaacctgtttcggtttgtcg---tttggtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG
   |||  | |   || || | |   | || | |   || |||  || | |  | ||| || | |||||   ||||| | ||| |     |||| | ||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||
---tgttaggttt-ttgtcattctgatctgatccctgtcgcttccgtttatgcgggaacttctctctgattttgttttgtttttttttgttttgatttgagcagAGGACTCGCTGAAGCGGGAGTCCGGCACGAAGGTTCACCATGCCAACATCCAGGCCGCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32798447|gb|CD950683.1|CD950683
EST:     CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCTCGTGATGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCTAACATCC
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttctgtgaaatttgtctgaacctgtttcggtttgtcgtttggtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG
         tgaaattt  TA-rich tract