1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gatatatgtttatgctcttatgttcttgttgtgtgaacttgagctagattttttttacttctcattagaatactgacgcttatgcttctcacgtgttcagGAGATATGCCTCGCAATGATGATCGCTATGGGAATACACGCTTGTATGTTGGAAGATTGTCTCCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAG
species | Zea mays |
transcript | GRMZM2G175419_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCCCGCCGCATCGCCGCCGCCGGAAGCGCCTCCCTCGATCCAGATCCAG GAGATATGCCTCGCAATGATGATCGCTATGGGAATACACGCTTGTATGTTGEST: gi|78109291|gb|DV527707.1|DV527707
genomic: TCCCCGCCGCATCGCCGCCGCCGGAAGCGCCTCCCTCGATCCAGATCCAGgtacaccgtg ... acgtgttcagGAGATATGCCTCGCAATGATGATCGCTATGGGAATACACGCTTGTATGTTG
EST: TCCCCGCCGCATCGCCGCCGCCGGAAGCGCCTCCCTCGATCCAGATCCAG GAGATATGCCTCGCAATGATGATCGCTATGGGAATACACGCTTGTATGTTGEST: gi|76290330|gb|DV029898.1|DV029898
genomic: TCCCCGCCGCATCGCCGCCGCCGGAAGCGCCTCCCTCGATCCAGATCCAGgtacaccgtg ... acgtgttcagGAGATATGCCTCGCAATGATGATCGCTATGGGAATACACGCTTGTATGTTG
EST: TCCCCGCCGCATCGCCGCCGCCGGAAGCGCCTCCCTCGATCCAGATCCAG GAGATATGCCTCGCAATGATGATCGCTATGGGAATACACGCTTGTATGTTGEST: gi|94473189|gb|EB702147.1|EB702147
genomic: TCCCCGCCGCATCGCCGCCGCCGGAAGCGCCTCCCTCGATCCAGATCCAGgtacaccgtg ... acgtgttcagGAGATATGCCTCGCAATGATGATCGCTATGGGAATACACGCTTGTATGTTG
EST: TCCCCGCCGCATCGCCGCCGCCGGAAGCGCCTCCCTCGATCCAGATCCAG GAGATATGCCTCGCAATGATGATCGCTATGGGAATACACGCTTGTATGTTG
genomic: TCCCCGCCGCATCGCCGCCGCCGGAAGCGCCTCCCTCGATCCAGATCCAGgtacaccgtg ... acgtgttcagGAGATATGCCTCGCAATGATGATCGCTATGGGAATACACGCTTGTATGTTG
agattttttttacttctcattagaatactgacgcttatgcttctcacgtgttcagGAGATATGCCTCGCAATGATGATCGCTATGGGAATACACGCTTGTATGTTGGAAGATTGTCTCCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAG
cttctcac CT-rich tract
ttttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatatgtttatgctcttatgttcttgttgtgtgaacttgagctagattttttttacttctcattagaatactgacgcttatgcttctcacgtgttcagGAGATATGCCTCGCAATGATGATCGCTATGGGAATACACGCTTGTATGTTGGAAGATTGTCTCCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA