1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgacagatatttacaattttacagttgtgtgttacgttattaattaaaactgacagatgcatgatctacgtatgctaaaaccatgcatatatatacgcagACGGAGGTCTTCTTCCTGGGACAACTGAGGCACCCTCACCTCGTGAAGCTGATCGGCTACTGCTACGAGGACGAGCACAGGCTGCTCGTCTACGAGTTCA
species | Zea mays |
transcript | GRMZM2G175164_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aaaactgacagatgcatgatctacgtatgctaaaaccatgcatatatatacgcagACGGAGGTCTTCTTCCTGGGACAACTGAGGCACCCTCACCTCGTGAAGCTGATCGGCTACTGCTACGAGGACGAGCACAGGCTGCTCGTCTACGAGTTCA
tgctaaa putative branch site (score: 20)
atatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgacagatatttacaattttacagttgtgtgttacgttattaattaaaactgacagatgcatgatctacgtatgctaaaaccatgcatatatatacgcagACGGAGGTCTTCTTCCTGGGACAACTGAGGCACCCTCACCTCGTGAAGCTGATCGGCTACTGCTACGAGGACGAGCACAGGCTGCTCGTCTACGAGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgca