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...tctcatcagtcccctattttccgccacgattccatctctccaccaacccctctgtaccttcttcccaactgattattgcattgacttgacttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTGAACGCAGCTGGAGAGACCGCGCAGTCCTGAATATGTTTGGTTTCTCGCG
species | Zea mays |
transcript | GRMZM2G174830_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAG GTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTGEST: gi|78114801|gb|DV533189.1|DV533189
genomic: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAGgtagtgctct ... ttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTG
EST: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAG GTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTGEST: gi|71433192|gb|DR814242.1|DR814242
genomic: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAGgtagtgctct ... ttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTG
EST: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAG GTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTGEST: gi|211353516|gb|FL063245.1|FL063245
genomic: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAGgtagtgctct ... ttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTG
EST: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAG GTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTGEST: gi|211351121|gb|FL063242.1|FL063242
genomic: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAGgtagtgctct ... ttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTG
EST: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAG GTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTGEST: gi|211351119|gb|FL063240.1|FL063240
genomic: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAGgtagtgctct ... ttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTG
EST: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAG GTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTGEST: gi|78081398|gb|DV509810.1|DV509810
genomic: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAGgtagtgctct ... ttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTG
EST: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAG GTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTGEST: gi|211351120|gb|FL063241.1|FL063241
genomic: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAGgtagtgctct ... ttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTG
EST: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAG GTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTGEST: gi|211351122|gb|FL063243.1|FL063243
genomic: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAGgtagtgctct ... ttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTG
EST: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAG GTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTG
genomic: AGTGCTGTGCTCCTGCACCGTACCGCAAACCCAGCCCAAGACTGCAAGAGgtagtgctct ... ttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTG
acccctctgtaccttcttcccaactgattattgcattgacttgacttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTGAACGCAGCTGGAGAGACCGCGCAGTCCTGAATATGTTTGGTTTCTCGCG
cttgttt CT-rich tract
tgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcatcagtcccctattttccgccacgattccatctctccaccaacccctctgtaccttcttcccaactgattattgcattgacttgacttgtttgcagGTGGCATAGGCTCATGTCCTGCCCAGCGGTTCGCTTCAAATTTCTGAGCTGAACGCAGCTGGAGAGACCGCGCAGTCCTGAATATGTTTGGTTTCTCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA