1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgcaactgcaggcgggcacatcaacccggcggtgaccttcgggctgttcctggcgaggaagttgtccctcaccagggcggtgttttacatcatcatgcagTGCCTGGGCGCCATCTGCGGCGCGGGCGTCGTCAAGGGGTTCCAGCAGGGGCTGTACATGGGCAACGGCGGCGGCGCCAACGTCGTGGCGCCCGGCTACA
species | Zea mays |
transcript | GRMZM2G174807_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCG TGCCTGGGCGCCATCTGCGGCGCGGGCGTCGTCAAGGGGTTCCAGCAGGGG
genomic: CTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGgtaccgtaca ... catcatgcagTGCCTGGGCGCCATCTGCGGCGCGGGCGTCGTCAAGGGGTTCCAGCAGGGG
gttcctggcgaggaagttgtccctcaccagggcggtgttttacatcatcatgcagTGCCTGGGCGCCATCTGCGGCGCGGGCGTCGTCAAGGGGTTCCAGCAGGGGCTGTACATGGGCAACGGCGGCGGCGCCAACGTCGTGGCGCCCGGCTACA
ccctcac putative branch site (score: 502)
ttttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcaactgcaggcgggcacatcaacccggcggtgaccttcgggctgttcctggcgaggaagttgtccctcaccagggcggtgttttacatcatcatgcagTGCCTGGGCGCCATCTGCGGCGCGGGCGTCGTCAAGGGGTTCCAGCAGGGGCTGTACATGGGCAACGGCGGCGGCGCCAACGTCGTGGCGCCCGGCTACA
- - - tgcaggc
- - - - - - - -gcacatc
- - - - - - - - - - - - - - - - - - - - - gctgttc