Sequence
atgc intronic sequence ATGC exonic sequence...tctctctctcttgctctgtctgtgtgtcccctctctctctctcctcctcctctctctctctcactcccccatgccctctgcttgtgcttgtgcaatgcagGGATTGCGGCAAGCAGGTCTATTTGGGTAAGTTTCGTTCATGTCCATGCATACACATCCGTACTTGGGAGAGAGGTGGGTGACTGCCCCAATCCGAGGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G174784_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g55560.2 (Oryza sativa), 3'ss of exon 1
--tctctctctcttgctctgtctgtgtgtcccctctctctctctcctcctcctctctctctctcactcccccatgccctctgcttgtgcttgtgcaatgcagGGATTGCGGCAAGCAGGTCTATTTGGGTAAGTTTCGTTCATGTCCATGCATACACATCCGTACTTGGGAGAGAGGTGGGTGACTGCCCCAATCCGAGGCG
|||||||| |||| ||| | | || | ||||| |||||| || | | ||| | || | | | ||||| | | ||||||||||||||||||| |||||||||||||||||||
ctctcctctctctctctctctctctctctctcttctct-tctctcatcactcaccatcttcttgtcttctctctctcctctcatcct-tttgtgcaatgcagGGATTGTGGCAAGCAGGTCTATTTGG-------------------------------------------------------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctcctctctctctctcactcccccatgccctctgcttgtgcttgtgcaatgcagGGATTGCGGCAAGCAGGTCTATTTGGGTAAGTTTCGTTCATGTCCATGCATACACATCCGTACTTGGGAGAGAGGTGGGTGACTGCCCCAATCCGAGGCG
ctctcac putative branch site (score: 3)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctctctctcttgctctgtctgtgtgtcccctctctctctctcctcctcctctctctctctcactcccccatgccctctgcttgtgcttgtgcaatgcagGGATTGCGGCAAGCAGGTCTATTTGGGTAAGTTTCGTTCATGTCCATGCATACACATCCGTACTTGGGAGAGAGGTGGGTGACTGCCCCAATCCGAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - -cttgctc