1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatactgaatgtttttgaaacctacagtcatgtcttccttactgtacctctgtgtatattatatttatgaaaaaaatgtatctttgcatttgtaaaccagGGCGCACTGGAGCTTGGTAATCATTTGCATTCCTGCAAAAGAGAGTATTTCAGGACCAATCATACTTCATCTGGACTCCCTAGCGATGCATCCCAGTACT
species | Zea mays |
transcript | GRMZM2G174667_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTGTCAATATATTAAATAAAGNATACATAATCTTGCCGATCCATGGGAT GGCGCACTGGAGCTTGGTAATCATTTGCATTCCTGCAAAAGAGAGTATTTC
genomic: GGTGTCAATATATTAAATAAAGCATACATAATCTTGCCGATCCATGGGATgtaagtcaat ... tgtaaaccagGGCGCACTGGAGCTTGGTAATCATTTGCATTCCTGCAAAAGAGAGTATTTC
acctctgtgtatattatatttatgaaaaaaatgtatctttgcatttgtaaaccagGGCGCACTGGAGCTTGGTAATCATTTGCATTCCTGCAAAAGAGAGTATTTCAGGACCAATCATACTTCATCTGGACTCCCTAGCGATGCATCCCAGTACT
tatattatatttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatactgaatgtttttgaaacctacagtcatgtcttccttactgtacctctgtgtatattatatttatgaaaaaaatgtatctttgcatttgtaaaccagGGCGCACTGGAGCTTGGTAATCATTTGCATTCCTGCAAAAGAGAGTATTTCAGGACCAATCATACTTCATCTGGACTCCCTAGCGATGCATCCCAGTACT
- - ctgaatg
- - - - - - - - - -acctaca
- - - - - - - - - - - - - - catgtct
- - - - - - - - - - - - - - - - - - -cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcatt