1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcctgccttccgttccgtcgtccagctcgcgagcaatcggcgatcggccgtcccgtcgtgagcgggagaggtttgacgggttgtcgctcgcgtcacgaattcctccgcagGTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTGCACCACGGCCTGCTCAAGGCCGCCAAGTTCATCCTGGAGCGGGAGACGG
species | Zea mays |
transcript | GRMZM2G174315_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAG GTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTGEST: gi|149095323|gb|EE180959.2|EE180959
genomic: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAGgtgcctgcct ... tcctccgcagGTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTG
EST: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAG GTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTGEST: gi|71319200|gb|DR796355.1|DR796355
genomic: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAGgtgcctgcct ... tcctccgcagGTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTG
EST: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAG GTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTGEST: gi|78077831|gb|DV506260.1|DV506260
genomic: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAGgtgcctgcct ... tcctccgcagGTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTG
EST: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAG GTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTGEST: gi|50323331|gb|CO518457.1|CO518457
genomic: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAGgtgcctgcct ... tcctccgcagGTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTG
EST: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAG GTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTGEST: gi|86466050|gb|DY232423.1|DY232423
genomic: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAGgtgcctgcct ... tcctccgcagGTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTG
EST: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAG GTGCTCTTGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTGEST: gi|89247662|gb|DY619448.1|DY619448
genomic: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAGgtgcctgcct ... tcctccgcagGTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTG
EST: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAG GTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTGEST: gi|88755924|gb|DY540065.1|DY540065
genomic: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAGgtgcctgcct ... tcctccgcagGTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTG
EST: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAG GTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTG
genomic: TCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAGgtgcctgcct ... tcctccgcagGTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTG
tcgtgagcgggagaggtttgacgggttgtcgctcgcgtcacgaattcctccgcagGTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTGCACCACGGCCTGCTCAAGGCCGCCAAGTTCATCCTGGAGCGGGAGACGG
gtttgac putative branch site (score: 32)
ttcctccgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctgccttccgttccgtcgtccagctcgcgagcaatcggcgatcggccgtcccgtcgtgagcgggagaggtttgacgggttgtcgctcgcgtcacgaattcctccgcagGTGCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTGCACCACGGCCTGCTCAAGGCCGCCAAGTTCATCCTGGAGCGGGAGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGACGGCG