1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgtttgtcaaatctgaacacagcaaacctatttctggttgattcaatgagttacatatttcttgtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA
species | Zea mays |
transcript | GRMZM2G174204_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|60354693|gb|DN221666.1|DN221666
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|60347312|gb|DN214285.1|DN214285
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: CCGCTGCCAAAG GTCAGACCTGTTGTTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|50332540|gb|CO527666.1|CO527666
genomic: CCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|45847152|gb|CN071095.1|CN071095
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: TGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTAGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|60350420|gb|DN217393.1|DN217393
genomic: TGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|211296298|gb|FL480002.1|FL480002
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|78109119|gb|DV527536.1|DV527536
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|60353886|gb|DN220859.1|DN220859
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGEST: gi|17930472|gb|BM267432.1|BM267432
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
EST: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAG GTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
genomic: AGCAAAAGAGGAAGGAAAAGGCTGGCAAATGGGATGTTCCGCTGCCAAAGgtgtttgtca ... gtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAG
acagcaaacctatttctggttgattcaatgagttacatatttcttgtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA
ggttgat putative branch site (score: 98)
tatttcttgtcctttc putative PPT
ttacatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttgtcaaatctgaacacagcaaacctatttctggttgattcaatgagttacatatttcttgtcctttcagGTCAGACCTGTTGCTGAAGAAGAAATGTTCAAGGTGCTACGAACTGGCAAGCGAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA