1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttattatcttagagcgccttttcctggtagaatgatagatttattctgaaactaagtaagatatacttcaactttctcttgtctttactgtatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTGTCGGAACTGTAGCAGCTCTGTTCATGTGGATCACTGGTATTATTAAGA
species | Zea mays |
transcript | GRMZM2G174107_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|13198536|gb|BG354370.1|BG354370
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|148965579|gb|EE016409.2|EE016409
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|149072176|gb|EE160417.2|EE160417
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|149110186|gb|EE294002.2|EE294002
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|13178099|gb|BG349357.1|BG349357
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGGTTTCCCATACCCTATAAACATCACAGAAGTTEST: gi|211399728|gb|FL235706.1|FL235706
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|78180316|gb|DV550689.1|DV550689
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|148964314|gb|EC905711.2|EC905711
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|149078331|gb|EE167099.2|EE167099
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|149098082|gb|EE184035.2|EE184035
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|148972203|gb|EE023080.2|EE023080
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|211302374|gb|FL235688.1|FL235688
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTNGEST: gi|13558927|gb|BG550282.1|BG550282
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTT-CCCATACCCTATAAACATCACAGAAGTTCAATTT-G
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|211302372|gb|FL235686.1|FL235686
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|148950588|gb|EC896170.2|EC896170
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|149082156|gb|EE171337.2|EE171337
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|211399721|gb|FL235699.1|FL235699
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|211399724|gb|FL235702.1|FL235702
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAGGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|211302370|gb|FL235684.1|FL235684
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCCATACC-TATAAACATCACAGAAGTTCAATTTGCEST: gi|148937401|gb|EC881581.2|EC881581
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCC-ATACCCTATAAACATCACAGAAGTTCAATTTGC
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|211399718|gb|FL235696.1|FL235696
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|211399730|gb|FL235708.1|FL235708
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGEST: gi|12047010|gb|BF729149.1|BF729149
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAG
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|211402267|gb|FL235711.1|FL235711
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTEST: gi|13150722|gb|BG321044.1|BG321044
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
EST: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAG GTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
genomic: TCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcc ... tatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCT
ctgaaactaagtaagatatacttcaactttctcttgtctttactgtatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTGTCGGAACTGTAGCAGCTCTGTTCATGTGGATCACTGGTATTATTAAGA
taagatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattatcttagagcgccttttcctggtagaatgatagatttattctgaaactaagtaagatatacttcaactttctcttgtctttactgtatgtgacagGTACTCAAGGTTTTCCCATACCCTATAAACATCACAGAAGTTCAATTTGCTGTCGGAACTGTAGCAGCTCTGTTCATGTGGATCACTGGTATTATTAAGA
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