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...tcatacctacaaggacaagctagccttgttgttgaccccttattttatggcaagatttatttgcttaaacactggctaaaaaatagcatctttcatgtagGTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTCCCACTCGATGAGCTGCGGCCCTTAAGTTGCCAAGGTGAAGACTCCCTTG
species | Zea mays |
transcript | GRMZM2G173868_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCGCCGAAGGTGTCACGCCCTCCGAGGCGCGCCGGCTCCGCGACGAG GTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTCEST: gi|71445066|gb|DR826116.1|DR826116
genomic: CCGTCGCCGAAGGTGTCACGCCCTCCGAGGCGCGCCGGCTCCGCGACGAGgtagtgcggg ... tttcatgtagGTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTC
EST: CCGTCGCCGAAGGTGTCACGCCCTCCGAGGCGCGCCGGCTCCGCGACGAG GTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTCEST: gi|211525689|gb|FK990909.1|FK990909
genomic: CCGTCGCCGAAGGTGTCACGCCCTCCGAGGCGCGCCGGCTCCGCGACGAGgtagtgcggg ... tttcatgtagGTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTC
EST: CCGTCGCCGAAGGTGTCACGCCCTCCGAGGCGCGCCGGCTCCGCGACGAG GTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTCEST: gi|74239213|gb|DT647127.1|DT647127
genomic: CCGTCGCCGAAGGTGTCACGCCCTCCGAGGCGCGCCGGCTCCGCGACGAGgtagtgcggg ... tttcatgtagGTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTC
EST: CCGTCGCCGAAGGTGTCACGCCCTCCGAGGCGCGCCGGCTCCGCGACGAG GTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTC
genomic: CCGTCGCCGAAGGTGTCACGCCCTCCGAGGCGCGCCGGCTCCGCGACGAGgtagtgcggg ... tttcatgtagGTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTC
tatggcaagatttatttgcttaaacactggctaaaaaatagcatctttcatgtagGTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTCCCACTCGATGAGCTGCGGCCCTTAAGTTGCCAAGGTGAAGACTCCCTTG
ggctaaa putative branch site (score: 3)
catctttc putative PPT
atttatttgcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatacctacaaggacaagctagccttgttgttgaccccttattttatggcaagatttatttgcttaaacactggctaaaaaatagcatctttcatgtagGTGAAAGATATGTTCTATCATGCGTTTGATGGATACATGAAGTATGCTTTCCCACTCGATGAGCTGCGGCCCTTAAGTTGCCAAGGTGAAGACTCCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA