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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgccttcgctcgccccgccgattggccccctgattctgtcctgtctgcgtggattcatgcgattgacgcggggttttctcttgttctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG

Basic information

species Zea mays
transcript GRMZM2G172001_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211505025|gb|FL086833.1|FL086833
EST:     CCGCGACTACAAAGGCCGCCGCGCCTKCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211505029|gb|FL086837.1|FL086837
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211502669|gb|FL086820.1|FL086820
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211502678|gb|FL086829.1|FL086829
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211505033|gb|FL086841.1|FL086841
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211505030|gb|FL086838.1|FL086838
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211507391|gb|FL086853.1|FL086853
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211507396|gb|FL086858.1|FL086858
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211502673|gb|FL086824.1|FL086824
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211505024|gb|FL086832.1|FL086832
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211502677|gb|FL086828.1|FL086828
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|149042113|gb|EE047091.2|EE047091
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211505027|gb|FL086835.1|FL086835
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211505031|gb|FL086839.1|FL086839
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211507385|gb|FL086847.1|FL086847
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211502674|gb|FL086825.1|FL086825
EST:     CCGCGACTACWAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|76921025|gb|DV168421.1|DV168421
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211502679|gb|FL086830.1|FL086830
EST:     CCGCGACTACAAAGGCCGCCGCGCNN--ATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211507386|gb|FL086848.1|FL086848
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211507390|gb|FL086852.1|FL086852
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|78077036|gb|DV505470.1|DV505470
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211505028|gb|FL086836.1|FL086836
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211507388|gb|FL086850.1|FL086850
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211502671|gb|FL086822.1|FL086822
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|71436584|gb|DR817634.1|DR817634
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|22935540|gb|BU571815.1|BU571815
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211502675|gb|FL086826.1|FL086826
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211507392|gb|FL086854.1|FL086854
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|71426022|gb|DR807072.1|DR807072
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|71303322|gb|DR787767.1|DR787767
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211507393|gb|FL086855.1|FL086855
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|26560007|gb|CA832242.1|CA832242
EST:     CGCGACTACAAAGGCCGCCGGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CGCGACTACAAAGGCCGCC-GCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211502670|gb|FL086821.1|FL086821
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211507394|gb|FL086856.1|FL086856
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|87157435|gb|DY402224.1|DY402224
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211505038|gb|FL086846.1|FL086846
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|78110540|gb|DV528950.1|DV528950
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|74241423|gb|DT649337.1|DT649337
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211507395|gb|FL086857.1|FL086857
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|71438530|gb|DR819580.1|DR819580
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|78110698|gb|DV529096.1|DV529096
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|71435348|gb|DR816398.1|DR816398
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|149108563|gb|EE292842.2|EE292842
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211507389|gb|FL086851.1|FL086851
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|94480407|gb|EB709365.1|EB709365
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211505032|gb|FL086840.1|FL086840
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|74243375|gb|DT651289.1|DT651289
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211505035|gb|FL086843.1|FL086843
EST:     CCGCGACTACAAAGGCCGCCGCGCC-GCATGATCAAGGCCCTCACCACTG                         ATGT-GAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|74237050|gb|DT644964.1|DT644964
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|15177432|gb|BI398386.1|BI398386
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|211502672|gb|FL086823.1|FL086823
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
EST: gi|5555374|gb|AI881325.1|AI881325
EST:     CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTG                         ATGTGGAGAGGTTCTTCAAACTCTGGGACCCCG
genomic: CCGCGACTACAAAGGCCGCCGCGCCGGCATGATCAAGGCCCTCACCACTGgtacgccttc ... tctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtctgcgtggattcatgcgattgacgcggggttttctcttgttctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG
                     gattgac  putative branch site (score: 3)
                                  ttttctcttgttctgt  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgccttcgctcgccccgccgattggccccctgattctgtcctgtctgcgtggattcatgcgattgacgcggggttttctcttgttctgtgcaagATGTGGAGAGGTTCTTCAAACTCTGTGACCCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG