1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatacatgggcatccaaaaggtcttgtgtgtgtttcattgctgctgtggtgattggttaggttggaccgtttcaacttacttctgattcgcaaattccagGGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCTGTCGTTCAGCTCCCTGGCTCCATTGTTTTTGTACTTCATCCAATGGCTG
species | Zea mays |
transcript | GRMZM2G171967_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCAT GGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCTEST: gi|211383689|gb|FL114690.1|FL114690
genomic: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCATgtaagcatgc ... caaattccagGGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCT
EST: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCAT GGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCTEST: gi|211383693|gb|FL114694.1|FL114694
genomic: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCATgtaagcatgc ... caaattccagGGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCT
EST: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCAT GGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCTEST: gi|78076532|gb|DV504966.1|DV504966
genomic: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCATgtaagcatgc ... caaattccagGGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCT
EST: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCAT GGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCTEST: gi|211383690|gb|FL114691.1|FL114691
genomic: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCATgtaagcatgc ... caaattccagGGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCT
EST: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCAT GGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCTEST: gi|211383691|gb|FL114692.1|FL114692
genomic: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCATgtaagcatgc ... caaattccagGGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCT
EST: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCAT GGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCT
genomic: AGAGGCCCCCTCAAAGCCCTAGAGGCAGACATCCACCACGCTAACGCCATgtaagcatgc ... caaattccagGGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCT
gtggtgattggttaggttggaccgtttcaacttacttctgattcgcaaattccagGGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCTGTCGTTCAGCTCCCTGGCTCCATTGTTTTTGTACTTCATCCAATGGCTG
aaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatacatgggcatccaaaaggtcttgtgtgtgtttcattgctgctgtggtgattggttaggttggaccgtttcaacttacttctgattcgcaaattccagGGCAGATGCTATTCAGAGGAATTATGGTGGCGCATGTGTGCAGATGAGGCTGTCGTTCAGCTCCCTGGCTCCATTGTTTTTGTACTTCATCCAATGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
-atacatg
- - - - -gcatcca
- - - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - -gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - gtgattg