1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...tgtttgaatcgctcagcaaatgtaataattgtttaccgaatatttgaggagttattatgttaagagtcttggcatgacataacctaagctaaaattatagGCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCACATCAACTCCCTCCACCACCTCCACCATGGACCGGTTTCAGAAGATTGT
species | Zea mays |
transcript | GRMZM2G171961_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTCCCCTCCTCCATCCCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAG GCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCAEST: gi|71448337|gb|DR829387.1|DR829387
genomic: TCGTCCCCTCCTCCATCCCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAGgtactgtctc ... aaaattatagGCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCA
EST: TCGTCCCCTCCTCCATCCCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAG GCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCAEST: gi|211265497|gb|FL119082.1|FL119082
genomic: TCGTCCCCTCCTCCATCCCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAGgtactgtctc ... aaaattatagGCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCA
EST: TCGTCCCCTCCTCCATCCCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAG GCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCAEST: gi|211267921|gb|FL119087.1|FL119087
genomic: TCGTCCCCTCCTCCATCCCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAGgtactgtctc ... aaaattatagGCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCA
EST: TCGTCCCCTCCTCCATCCCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAG GCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCAEST: gi|19350666|gb|BM895198.1|BM895198
genomic: TCGTCCCCTCCTCCATCCCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAGgtactgtctc ... aaaattatagGCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCA
EST: TCGTCCCCTCCTCCAT-CCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAG GCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCAEST: gi|71430237|gb|DR811287.1|DR811287
genomic: TCGTCCCCTCCTCCATCCCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAGgtactgtctc ... aaaattatagGCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCA
EST: TCGTCCCCTCCTCCATCCCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAG GCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCA
genomic: TCGTCCCCTCCTCCATCCCCGGCGCGGCGGCGCCAGCAGCCGGCCTGCAGgtactgtctc ... aaaattatagGCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCA
gaggagttattatgttaagagtcttggcatgacataacctaagctaaaattatagGCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCACATCAACTCCCTCCACCACCTCCACCATGGACCGGTTTCAGAAGATTGT
agctaaa putative branch site (score: 63)
taagctaaaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttgaatcgctcagcaaatgtaataattgtttaccgaatatttgaggagttattatgttaagagtcttggcatgacataacctaagctaaaattatagGCACACAAGTGGCCACCCTTCCAATGGCGGTGGAGAAGTCCAGCAGCGGCACATCAACTCCCTCCACCACCTCCACCATGGACCGGTTTCAGAAGATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - -cagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgac