1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cgccgagaaggtttcgtttccacgctttttaagtttagttctgttccttctgttcccccaaatgacattctaaatgaaacgaatatcgctccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGGGAGGAAGGAATGGATGCCACTCTCGTCCATCTCTGAGCTACACTCCGC
species | Zea mays |
transcript | GRMZM2G171660_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATGTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|211141172|gb|FL018634.1|FL018634
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAN CEST: gi|211141172|gb|FL018634.1|FL018634
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcag-
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAN CEST: gi|211141169|gb|FL018631.1|FL018631
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcag-
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|91054747|gb|EB165165.1|EB165165
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|149070733|gb|EE159146.2|EE159146
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|211475992|gb|FL018624.1|FL018624
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|148966210|gb|EE017166.2|EE017166
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|211141175|gb|FL018637.1|FL018637
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|50335300|gb|CO530426.1|CO530426
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|211141170|gb|FL018632.1|FL018632
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|76909704|gb|DV163493.1|DV163493
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|211141171|gb|FL018633.1|FL018633
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|211141166|gb|FL018628.1|FL018628
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|211475990|gb|FL018622.1|FL018622
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|149004610|gb|EE039124.2|EE039124
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|211475989|gb|FL018621.1|FL018621
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGEST: gi|211141165|gb|FL018627.1|FL018627
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
EST: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAG AACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
genomic: TGGACCGAACCAGGAGGGCGTCGGACCCTACGCGCTTGCTGAGCTTCGAGgtggctgttt ... ccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAG
ccttctgttcccccaaatgacattctaaatgaaacgaatatcgctccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGGGAGGAAGGAATGGATGCCACTCTCGTCCATCTCTGAGCTACACTCCGC
ttctaaa putative branch site (score: 2)
tcgctcccttt putative PPT
attctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgccgagaaggtttcgtttccacgctttttaagtttagttctgttccttctgttcccccaaatgacattctaaatgaaacgaatatcgctccctttgcagAACATTTCGCAAACGGTTATTTCAATGAGAGCACAATGCTCTGGGCAGAAGGGAGGAAGGAATGGATGCCACTCTCGTCCATCTCTGAGCTACACTCCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA