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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcggggaccatatatcatagtgtgtattccaaatgtgattgatagaaattgagatagtggttaccggtctcattagttcatttgacctgaatttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG

Basic information

species Zea mays
transcript GRMZM2G171469_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171469_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g02850.2 (Oryza sativa), 3'ss of exon 1
gcggggaccatatatcatagtgtgtattccaaatgtg-attgatagaaattgagatagtggt--taccggtctcattagttcatttgacctgaatttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG
  ||| ||  | || | ||  || |  |  || |||  | |||| || |    |  |   ||   |   |  || || |  | ||||    ||||||   ||||||||| |||| |||||||| ||  | || |||||||| || ||||| || |||||||||||||||||| | ||| | ||||| ||||| |
--gggaactttgtagcttaccgtatgcttgaattgtatagtgatggagacatgggcatcagtctcatttgagtcgtttgcacttttggga-gaatttttgcagGTCCAATTGATCAGAATCGAATGTAGAGTACCTGAGTACGGATGGACGACACAGAAGGTGTTCCATTTCATGAACTTTATTGTGAATGGAG

upper sequence: GRMZM2G171469_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ15891 (Selaginella moellendorffii), 3'ss of exon 1
gcggggaccatatatcatagtgtgtattccaaatgtga-ttgatagaaattgagatagtggttaccggtctcattagttcatttgacctgaatttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG
                                  || | ||  | ||   |   |   | | |     ||  ||   ||   ||    ||  | |  | || |||||||  | |||||  |   |||||| || |||||||| |||||||||||||| ||||||||| |||| ||  || |||| ||||| |
----------------------------------gtaagttagttgattcttgtaagttagctgtgtttcctatcgattttcttcctttgtttctt-ttagATCCAACTCGTTAGAATACAAATCCGGGTGCCGGAGTATGGCTGGACAACGCAGAAAGTGTTCCATCTCCTCAATTTCTTTGTAAATGGAG

upper sequence: GRMZM2G171469_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ33253 (Selaginella moellendorffii), 3'ss of exon 1
gcggggaccatatatcatagtgtgtattccaaatgtga-ttgatagaaattgagatagtggttaccggtctcattagttcatttgacctgaatttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG
                                  || | ||  | ||   |   |   | | |     ||  ||   ||   ||         ||  | || |||||||  | |||||  |   |||||| || |||||||| |||||||||||||| ||||||||| |||| ||  || |||| ||||| |
----------------------------------gtaagttagttgattcttgtaagttagctgtgtttcctatcgattttcttc-------ctttgttagATCCAACTCGTTAGAATACAAATCCGGGTGCCGGAGTATGGCTGGACAACGCAGAAAGTGTTCCATCTCCTCAATTTCTTTGTAAATGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211394911|gb|FL373461.1|FL373461
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211280348|gb|FL373309.1|FL373309
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211494351|gb|FL425169.1|FL425169
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|78108686|gb|DV527104.1|DV527104
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211249778|gb|FL400508.1|FL400508
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|149017006|gb|EE045660.2|EE045660
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211542534|gb|FL409062.1|FL409062
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211330706|gb|FL425856.1|FL425856
EST:     CCTTCMACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|91873273|gb|EB403230.1|EB403230
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|78108178|gb|DV526596.1|DV526596
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|71322323|gb|DR797838.1|DR797838
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|74245269|gb|DT653183.1|DT653183
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211015090|gb|FL429494.1|FL429494
EST:     CCTTCCACGCCCTCGCCGCGCTCTACGGCATCGTTGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|78079086|gb|DV507498.1|DV507498
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211278771|gb|FL390080.1|FL390080
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|50339374|gb|CO534500.1|CO534500
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|76018861|gb|DT946031.1|DT946031
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|74237785|gb|DT645699.1|DT645699
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211503826|gb|FL372211.1|FL372211
EST:     CTTACCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CTT-CCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211060391|gb|FL405187.1|FL405187
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211461108|gb|FL380552.1|FL380552
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|50333507|gb|CO528633.1|CO528633
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211194228|gb|FL384757.1|FL384757
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|71770532|gb|DR968469.1|DR968469
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211500289|gb|FL429983.1|FL429983
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|149075806|gb|EE164341.2|EE164341
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211199876|gb|FL416104.1|FL416104
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|38688376|gb|CK145407.1|CK145407
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAAGTATGGGTGGACAAC
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGA-GTATGGGTGGACAAC
EST: gi|211195060|gb|FL425764.1|FL425764
EST:     CCTTCCACGCCCTCGCCGCGCTCTACGGCATCGTTGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGYGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211158139|gb|FL392767.1|FL392767
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
EST: gi|211504995|gb|FL428970.1|FL428970
EST:     CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTA                         GTCCAACTTATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG
genomic: CCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 42 (downstream exon)
Score: 47

CGCGGCCTGGTGGGACGACGTGAACAACTCCACGCTGTGGCAGGACCGCACCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 67

CGCGGCCTGGTGGGACGACGTGAACAACTCCACGCTGTGGCAGGACCGCACCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 65

CGCGGCCTGGTGGGACGACGTGAACAACTCCACGCTGTGGCAGGACCGCACCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 114

CGCGGCCTGGTGGGACGACGTGAACAACTCCACGCTGTGGCAGGACCGCACCTTCCACGCCCTCGCCGCGCTATACGGCATCGTCGCAGTCGTAGCCCTAgtaagctcta ... atttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattgagatagtggttaccggtctcattagttcatttgacctgaatttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG
                                  atttgac  putative branch site (score: 114)
                                              tttcatc  putative PPT
                                            aatttcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcggggaccatatatcatagtgtgtattccaaatgtgattgatagaaattgagatagtggttaccggtctcattagttcatttgacctgaatttcatcagGTCCAACTGATAAGAATCGAGTGCCGGGTTCCTGAGTATGGGTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG

- - - - - - - - - - - - - - - - -tgtgatt
- - - - - - - - - - - - - - - - - - - - gatagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacctg