1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtggaactatcctggcatggtaacatcattatgttggaaagcaaaactgtgttattgtgttaggttcagagttttcatctgccaatggttctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCCTTCCTTCCCGCAATGATCTCACTCCGGTAACTACAATAGCCGGTGGAA
species | Zea mays |
transcript | GRMZM2G171400_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|211235411|gb|FL352703.1|FL352703
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|148949091|gb|EC894518.2|EC894518
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|211081204|gb|FL350812.1|FL350812
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|211473386|gb|FL358543.1|FL358543
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|211416803|gb|FL322241.1|FL322241
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|71449339|gb|DR830389.1|DR830389
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|211472684|gb|FL333724.1|FL333724
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|91877865|gb|EB407822.1|EB407822
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|211402374|gb|FL353780.1|FL353780
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|211474900|gb|FL324941.1|FL324941
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|211164532|gb|FL392826.1|FL392826
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCTTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCEST: gi|9028606|gb|BE238646.1|BE238646
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
EST: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAG GTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
genomic: ACTGGTCCCTCCTCGACCGCGTCCCTGGCGACCGCGGCGGCTCGCAGCAGgtacttcctt ... ctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATC
actgtgttattgtgttaggttcagagttttcatctgccaatggttctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCCTTCCTTCCCGCAATGATCTCACTCCGGTAACTACAATAGCCGGTGGAA
ttctattt CT-rich tract
ttctattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggaactatcctggcatggtaacatcattatgttggaaagcaaaactgtgttattgtgttaggttcagagttttcatctgccaatggttctatttacagGTATCCATTGATGAGCTGAATCATATTCTTGATGAAGTGAATGCCCACATCCTTCCTTCCCGCAATGATCTCACTCCGGTAACTACAATAGCCGGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - -tcctggc
- - - - - - - - - - -aacatca
- - - - - - - - - - - - - - -tatgttg
- - - - - - - - - - - - - - - - - - - aagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgtt