Sequence
atgc intronic sequence ATGC exonic sequencegtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g04090.1 (Oryza sativa), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacat-gcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
||| | || || || ||| || || || | | ||| || || |||| | ||| | | || ||||||||| |||| | || || || || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || || ||
-----------------------------------------gtacgtaattaagcacacacacatcgatcaattcgatcgatttttgacatgttttgat-ca-atgtggcatgtgtgtatcatacat------acatatgcagAGAGGTGCAGGATTGGGTCAGGGCCGCAAAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACGAACCGGGCAACGGC
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA19G44910.1 (Glycine max), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
| || | ||| || | ||| || || | |||| | | |||||||| |||| || || |||| || ||||| |||||||| |||||||||||| ||||||||||||| ||||| | ||||| ||||||||||||
-------------------------------------------------------------gtgatgatttttttgctaagtagctaagataattaatgagta-gtgcatgtaattgat-----------taatttgtgcagAGATGTGCAAAATAGGAAGCAGCCCACAAAACGATTGGTACTTGTTCAGCCACAAGTACAAGAAGTACCCCACGGGAAGCCGCACAAACCGCGCCACCAG
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G02200.1 (Glycine max), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
| ||| ||| |||| | ||||| | | | | || | | | | || | | | || | | ||||||||| ||| || || | || ||||| || |||||||||||||||||||| |||||||||||||| || || ||||||||||| ||||| || ||
---------------------------------------gaatattcaaatattgcatcatgggt-catgcat--gacatgaatcacggcactaatgcaccattttgaggggtttcttttttcttttctttattttttgcagAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGAACGCGCACCAATCGCGCAACTGC
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA07G05660.1 (Glycine max), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctc-tgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
||| || || | | ||| |||| | ||||| | || | | || | | || | | || || | | ||||||||| ||| || || | || ||||| || |||||||||||||||||||| |||||||||||||| || || ||||||||||| |||||||| ||
----------------------------------ttggaatattcaaatat-tgca-tcatgagt-catgctgcatgacatgaatcacggcatcattttgaggggtttcttttttctttctatctttctttt------tgcagAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGAACGCGCACCAATCGCGCCACTGC
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA19G44890.1 (Glycine max), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
|| | | | | ||| || ||| | | | | | | | |||||||| |||| || || |||| || ||||| |||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||| |
-------------------------------------------------------------------gtgatgattttttttgctcagtagctaagata-attgatgagtagtgcatgtaattaat----taatttgtgcagAGATGTGCAAAATAGGAAGCAGCCCACAAAACGATTGGTACTTGTTCAGCCACAAGGACAAGAAGTACCCCACGGGAAGCCGCACCAACCGCGCCATCAT
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G32770.1 (Arabidopsis thaliana), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgc-atacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtg-accgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
|| | | || | | | |||| | | | | ||| | | | | | | ||| | ||| | |||||||| | || | |||||||| || || |||||||||||||||||||||||||||||||||||||| || || ||||| | || ||||| || || |
-----------------------------------------------gttaaaccctaaatatgaaaaaaaactctttcatttctacgaactctctatttctttgttctttatttttga--accattttggtatgcaaatgcagAGGAATGTAGAATCGGTTCAACGCCACAAAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTATCCAACCGGGACCAGGACGAACCGGGCAACAGT
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT2G46770.1 (Arabidopsis thaliana), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
|| || || || ||||| | | ||| |||| | | | | | || | | | | ||| | | |||| ||||||||| ||| || || | || || ||||||||||| ||||| |||||||||||||| || || |||||||| ||| | || ||| | ||||| ||
-------------------catattcggagttagttactgcaaa-----------gacca-acataggtttggttattatacaatt-tactatttaagtttttttcttctgattatttttgtcg----------ttatgcagAGATGTGTAAAATAGGAACAACGCCACAAAACGACTGGTATTTCTTTAGCCACAAGGACAAAAAATATCCGACGGGAACGAGAACTAACAGAGCCACTGC
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv02s0025g02710.t01 (Vitis vinifera), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
| ||| | || || | | || || | ||| | | | || || | | | | | ||||||||| ||| || || || || ||||| || |||||||||||||| ||||| || ||||||||||| || ||||| | || || |||||||||||
---------------------------------------------------gtaaagccttctctagattc----actaccctgtaatgcttcatgatt--tgctttctttgtgctcatgtttgctctcgaaattt-tgcagAGAAATGCAAAATAGGATCCACTCCACAGAATGATTGGTACTTCTTCAGTCACAAAGATAAGAAGTACCCCACAGGGACAAGAACAAATCGCGCCACCGC
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv15s0048g02660.t01 (Vitis vinifera), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggt---gaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
||| || || | | | || | ||| | | | | || || | | | | ||| | || | |||| || ||| | |||||||||||| | || || || ||| || ||||| ||||||||||||||||||||||||||||| || || ||||| || | || || |||||||| ||
-------------gttgtgctt-catat-ttagttcatcgcctctcattcttttctcttaattttgca-attcttgttgaatattccatcaagatagcgtgtatcttcccctttgtgatgttcatatcggcttgggtttttgcagAGAAGTGTAGAATAGGATCCACCCCTCAAAACGATTGGTACTTCTTCAGCCACAAGGACAAGAAATATCCAACGGGAACCAGGACTAATCGCGCCACTGC
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S1_447V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------gtagtactacgctgttacgcacg----cacgcgcttgcttgctgcatacatgtctatgcggcc----------atgcatacatgcctctgccgtccgtctgccctcc----ccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCG-CATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
| || | || | |||| ||| |||| |||| ||| |||||| | || | | ||| | | | | ||| || | | || | || | | || | | | | || || | || | | | | | || |||||||||||||||||||||||||| ||||| |||||||| |||| | || | |||||
gtaagaatcgatcagaatcctcggtgtactatgtatgacaccagactagaaaacacgtcctcacatgcttcgttgccccatttcagtctattaagattgaactcatggtgtgttcgagccctgggattgcaattagattccatgtccactacgtacacggacaagtaaccccgatgtggtcatcagAAGTGTGCAGGATTGGGGACGACCCACCAGAGAATCAAAACGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCCTCGGGCAATCGAGCGAACCG---------
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S102_187V6.1 (Physcomitrella patens), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctg--catacatgtctatgcggccatgcatacat---gcctctgccgtccgtctgcc---ctccccgatgcatat-atggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC-
||| | || ||| ||| | |||| || | | | |||| | | || | | || | ||| | || || | || | | | | | | | |||||| || | | || | | ||||| |||||||||||||||||||||||||| ||||| || || |||| || | || || ||||||||
------------------gcatgaacatgctcatttgaaggacatatttgagtttcgaatttctcccacatagagtttttgttttgggattggtggatatcttgatactgatgatattcaatttttgtggcgatgtcaggggt--atgcag-
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S6_458V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------gtagtactacgctgttacgcacgcacgcgctt--gcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccga-tgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCG-CATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
|| | | | | | | | || ||||| | | | | ||| || || || ||| || | | | | | | | | | | ||| || | | | | | | | | | || |||| || || | || | | |||| ||||||||||||||||||||||||||||||||| || || || || | ||| | |||||
gtaagccaacgaacccacattttgcaggatttcattaacgttggttgaggttagaaaactggaactcgctttagttcgaggaatatataaatagatatggatatatatatatatatat-atatatgagaatactctaagtactgataacaccatctgtacttgcggcgaca-tcagAGGTGTGCAGAATTGGCGACGACGCACCCGAGAATCAGAGCGACTGGTACTTCTTCAGCCACAAGGACAAGAAATATCCTACTGGAAACCGCGCAAACCG---------
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S223_12V6.2 (Physcomitrella patens), 3'ss of exon 2
----------------------------gtagtact----acgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccga-tgcatatatggccg------atcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCC---CAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
|||| | | | | || | ||| | | | |||| | | | | || || | | || | | || | || | |||| | | || | | | | | | | || ||| || || || || || | ||| | ||||| ||||| | |||||||||||||||||||||||| | ||| |||||||
gtatgcaacaattcatttcagagtattcgtagcatttttcatgttgagggatgtcaatagatttgggacccgga-acatagccttaagaac-tggattgaaaaccacaccacctga-tgtgatatttgactccatacttcatcacctaaaattcgggtgttaaatcatgcaacagATCTTTGCAAAATCCAGGCCGACTCAAATGAGAAGCAAACCGATTACTACTTTTTCAGTCGCAAGGACAAGAAGTACCCGACGGGCAACCGCGCCAACCG---------
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S182_37V6.1 (Physcomitrella patens), 3'ss of exon 1
-----------------------------------------gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgc---atacatgcctctgc---cgtccgtctgccctccccgatgcat-atatggccgatcctgatcgtcgag---ccggtg-accgatgcagAGAAGTGCCGCATCGGT---------TCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
| ||| || | || || | || || || | | | || | || | || || |||| | |||| | | | || | | | | || |||||| |||| |||| | ||||| | | | || | |||||||||||||||||||||||||| |||||||| || || || | || |||||||
gtaagcatcggaatcctgaaggtagtatggtgcagtgttcaacctcctcatctagtttcgtcaaaaaataaacatttaaaacagtactatccattgaattgtgatcaacataagctcaagagcatgttctcctcatctattgatagcatgaaatggtccagcagtattgacaaaaacttgttgcaccgat-cagAAGTGTGCAGGATCGGGGACGACGCACCAGAGCATCAAAGTGACTGGTACTTCTTCAGCCACAAGGATAAGAAGTATCCCACAGGAAACCGTGCCAACCG---------
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S77_42V6.1 (Physcomitrella patens), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgt-ctatgcggccatgcatacatgc-ctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
|| | | || || || | | | | | | |||| | || ||| | |||| | | ||| | | | | ||| ||||| ||| || | ||| | ||||||| ||||||||||||| ||||| ||||||||||||||||| || || | ||| |||||||
----------------------------gcaagatcatcacactcaagtgccaacctgaagcacgtgcatgtacattgtaatccaaggaagagtattgg-gcattgctaactgatagcgtccattgcagAGGT-----ATGCA-AGATTCCAGGCGACCATTCCGTGAACCAGAACAACTGGTACTTCTTTAGCCATAAGGACAAGAAGTACCCCACCGGCAACCGCGCCAACCG---------
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcata--catgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcg-tcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
| | | | | | | || | | || | ||| | | | | | | | | ||| | | || | | | | | | | ||| | | | | || | |||| |||||| || || || | ||| |||| |||||||||||||||||||| |||||||| |||||||| |||||| | |||||| | |||||||
----------------------gtaag-acggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccac--acacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ22020 (Selaginella moellendorffii), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
| | | | ||| || | | | || || | | | || | | | || ||||||||||| ||||| || | || | ||| |||||||| ||||| ||||||||||||||||| || ||||| || ||||||||| | ||||||||
-------------------------------------------------------------gtagtctagtctcctccatttcgatatgatt----gcacaccactgac--acctctttcattgttctt-cgattttggcagAGAAGTGTAAGATCGGATCAGCTGAACAAACCGAATGGTACTTTTTCAGTCACAAGGACAAGAAGTATCCCACGGGAACTCGCACCAACAGAGCCACCGC
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ37712 (Selaginella moellendorffii), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcg-tcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
| | | ||| | | | | || | | | | | | | | | | | | ||| | | || | | | | | | | ||| | | | | || | |||| |||||| || || || | ||| |||| |||||||||||||||||||| |||||||| |||||||| |||||| | |||||| | |||||||
------------------gtaag-acggtcatccctcaagctt-ctcatttcgggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccac--acacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
upper sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ18283 (Selaginella moellendorffii), 3'ss of exon 1
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
| | | | ||| | | | | || || | | | || | | | || ||||||||||| ||||| || | || | ||| |||||||| ||||| ||||||||||||||||| || ||||| || ||||||||| | ||||||||
-----------------------------------------------------------------gtagtctagtctcctccatttcgacatgattacacaccactgac--acctctttcattgttctt-cgattttggcagAGAAGTGTAAGATCGGATCAGCTGAACAAACCGAATGGTACTTTTTCAGTCACAAGGACAAGAAGTATCCCACGGGAACTCGCACCAACAGAGCCACCGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148961230|gb|EE011946.2|EE011946EST: CGTCATCCGCGACGTCGACCTGAACAAGCTGGAGCCATGGGACATCCAAG AGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCC
genomic: CGTCATCCGCGACGTCGACCTGAACAAGCTGGAGCCATGGGACATCCAAGgtagtactac ... accgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCC
EST:
gi|101395632|gb|EB819745.1|EB819745EST: CGTCATCCGCGACGTCGACCTGAACAAGCTGGAGCCATGGGACATCCAAG AGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCC
genomic: CGTCATCCGCGACGTCGACCTGAACAAGCTGGAGCCATGGGACATCCAAGgtagtactac ... accgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCC
EST:
gi|76918975|gb|DV167539.1|DV167539EST: CGTCATCCGCGACGTCGACCTGAACAAGCTGGAGCCATGGGACATCCAAG AGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCC
genomic: CGTCATCCGCGACGTCGACCTGAACAAGCTGGAGCCATGGGACATCCAAGgtagtactac ... accgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCC
EST:
gi|149107800|gb|EE292161.2|EE292161EST: CGTCATCCGCGACGTCGACCTGAACAAGCTGGAGCCATGGGACATCCAAG AGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCC
genomic: CGTCATCCGCGACGTCGACCTGAACAAGCTGGAGCCATGGGACATCCAAGgtagtactac ... accgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 2 RNA-Seq libraries.
Block sizes:
39 (upstream exon),
44 (downstream exon)
Score:
4CTGACCTACTACCTGAAGAAGAAGGTGGCGTCGGAGCGCATCGACCTGGACGTCATCCGCGACGTCGACCTGAACAAGCTGGAGCCATGGGACATCCAAGgtagtactac ... accgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
Block sizes:
48 (upstream exon),
44 (downstream exon)
Score:
9CTGACCTACTACCTGAAGAAGAAGGTGGCGTCGGAGCGCATCGACCTGGACGTCATCCGCGACGTCGACCTGAACAAGCTGGAGCCATGGGACATCCAAGgtagtactac ... accgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
<
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
tcctgat putative branch site (score: 9)
atatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcatacatgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcgtcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT